SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3927

Length: 279 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3927
ATGGGGAGATTTGATAGAGAACATGCGTGCACCTCCCTTTGAAGCTCTTGTTGAAGAGTTTAGGGAAAATAATCCACATGATGTCGATTTGAAGATGTACCATGAGAATGGCATTTTGAAGGAGTCAAAGCCTCATCAGGAGTCCCTCATACCCAGAGATTCACGCTCACCATTAACACAAGTTAATTAAAATTGCTTCACATGTATTTCATTTATTCTCATAAAGCTTGAAGGTTGTCAGTTTCCCCTGCTAATGTATTGTAGTACAAGATGGTTCCC

Ace file of the UniGene biog2_v2.0_unigene3927 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4391	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=125 kDa kinesin-related protein dbj\|BAA23159.1\| TKRP125 [Nicotiana tabacum]	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	125 kda kinesin-related	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	70%
Blast2go	microtubule motor activity	GO:0003777	Molecular Function	70%
Blast2go	cytoskeleton	GO:0005856	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Kinesin-related conserved domain	IPR010544	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9P3

Fln msg: your sequence is shorter than subject: 63 - 353

Fln protein: WGDLIENMRAPPFEALVEEFRENNPHDVDLKMYHENGILKESKPHQESLIPRDSRSPLTQVN*

Protein Length: 64

Fln nts: ATGGGGAGATTTGATAGAGAACATGCGTGCACCTCCCTTTGAAGCTCTTGTTGAAGAGTTTAGGGAAAATAATCCACATGATGTCGATTTGAAGATGTACCATGAGAATGGCATTTTGAAGGAGTCAAAGCCTCATCAGGAGTCCCTCATACCCAGAGATTCACGCTCACCATTAACACAAGTTAATTAA___AATTGCTTCACATGTATTTCATTTATTCTCATAAAGCTTGAAGGTTGTCAGTTTCCCCTGCTAATGTATTGTAGTACAAGATGGTTCCC

Fln Alignment:

Contig3927___DLIENMRAPPFEALVEEFRENNPHDVDLKMYHENGILKESKPHQESLIPRDSRSPLTQVN
D5A9P3_________________DLIENMRAPPFEALVEEFRENNPHDVDLKIYHENGISKESKPRQDSLIPRDSRSPLTQVN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain