SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3864

Length: 446 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3864
TTGATTGCCGTTTGCATGGTTGTTCTCAGGCTCTTGTTTTCCCTTGTGAAAAACAATCACCATGGATGCCTCCAGAAGTAGATTGTAGCATGCCGTGTGGTACTCACTGCTATCGTCTGCGGGTTGCAAAAGTTGAAGAAACAAGTGGTGCAAATTCACTTCCTGACATTTGTGAGGCAAAACCTGTTCTTTCTATAAGCAATGATGTACCTAAGGTATGCACTCGAAGGAAAGGTTCAATTGGTGGTGGCTTGAGAACAGGAAAAGCTCCTCAAACTGAAAGTGGCTGTTCAAATGAAAAGCCAGTGACTGAGAGCAGCTGTGGTGAATATGATGTGGGGAAGGACAGCTCTGACTTTAAGCAGTCCGAATCATCACGTGAGGGTAAACAGAAGGGAAAACTTGCAGGGAGTTCAAATAAAGATAATAAAAGGACTGCTGAACGA

Ace file of the UniGene biog2_v2.0_unigene3864 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2045	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	SET domain protein n=1 Tax=Populus trichocarpa RepID=B9HHA3_POPTR	-	-	43%
FL-Next	sp=Histone-lysine N-methyltransferase CLF; Arabidopsis thaliana (Mouse-ear cress).	-	-	37%
Blast2go	polycomb protein ez1	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	von Willebrand factor, type C	IPR001007	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P93831

Fln msg: Distance to subject end: 481 aas, your sequence is shorter than subject: 148 - 902

Fln protein: DCRLHGCSQALVFPCEKQSPWMPPEVDCSMPCGTHCYRLRVAKVEETSGANSLPDICEAKPVLSISNDVPKVCTRRKGSIGGGLRTGKAPQTESGCSNEKPVTESSCGEYDVGKDSSDFKQSESSREGKQKGKLAGSSNKDNKRTAER

Protein Length: 149

Fln nts: TTGATTGCCGTTTGCATGGTTGTTCTCAGGCTCTTGTTTTCCCTTGTGAAAAACAATCACCATGGATGCCTCCAGAAGTAGATTGTAGCATGCCGTGTGGTACTCACTGCTATCGTCTGCGGGTTGCAAAAGTTGAAGAAACAAGTGGTGCAAATTCACTTCCTGACATTTGTGAGGCAAAACCTGTTCTTTCTATAAGCAATGATGTACCTAAGGTATGCACTCGAAGGAAAGGTTCAATTGGTGGTGGCTTGAGAACAGGAAAAGCTCCTCAAACTGAAAGTGGCTGTTCAAATGAAAAGCCAGTGACTGAGAGCAGCTGTGGTGAATATGATGTGGGGAAGGACAGCTCTGACTTTAAGCAGTCCGAATCATCACGTGAGGGTAAACAGAAGGGAAAACTTGCAGGGAGTTCAAATAAAGATAATAAAAGGACTGCTGAACGA

Fln Alignment:

Contig3864___DCRLHGCSQALVFPCEKQSPWMPPEVDCSMPCGTHCYRLRVAKVEETSGANSLPDICEAKPVLSISNDVPKVCTRRKGSIGGGLRTGKAPQTESGCSNEKPVTESSCGEYDVGKDSSDFKQSESSREGKQKGKLAGSSNKDNKRTAER
P93831_________________DCRLHGCSQDLIFPAEKPAPWCPP-VDENLTCGANCYK-TLLKSGRFPGYGTI----EGKTGTSSDGAGTKTTPTKFSSKLNG-RKPKTFPSESASSNEKCALETSDSENGLQQDTNSDKVS-SSPKVKGSGRRVGRKRNKN-RVAER

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
307		25		75	0.996473
308		25		75	0.996473
309		25		75	0.996473
310	25	75			0.996473
360		33		66	0.997452
363		66		33	0.997452
365	33	66			0.997452
366	66	33			0.997452
369		66	33		0.997452
371	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain