SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3808

Length: 212 nt

UniGene Fasta

>biog2_v2.0_unigene3808
ATGGGGTCTTTGAGGGTAGTTTAATTCGTGCAATTCGAAGATTGGAAGAAGTTCTTCAACAGCTAGTACTAGCTTCGAGATCTGTAGGCGAGGTTCAGCTAGAATTAAAATTTCAGGAGGCTATTACAAGAATTAAAAGAGACATTGTTTTCGCTGCATCATTGTACTTGTAGATTCTAATATAATTTAAAAATTACTAGAAAGTAGGTTTA

Ace file of the UniGene biog2_v2.0_unigene3808

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1012	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	RNA helicase [Arabidopsis thaliana] gb\|AAD39319.1\|AC007258_8 Very similar to helicases [Arabidopsis thaliana] dbj\|BAD44599.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE33616.1\| RNA helicase [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	skiv2l2 protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	82%
Blast2go	maturation of 5.8S rRNA	GO:0000460	Biological Process	82%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	82%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	exosome (RNase complex)	GO:0000178	Cellular Component	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%
Blast2go	catalytic step 2 spliceosome	GO:0071013	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	DSH, C-terminal	IPR012961	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	RNA helicase, ATP-dependent, SK12/DOB1	IPR016438	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMT3

Fln msg: your sequence is shorter than subject: 57 - 884

Fln protein: GVFEGSLIRAIRRLEEVLQQLVLASRSVGEVQLELKFQEAITRIKRDIVFAASLYL*

Protein Length: 58

Fln nts: ATGGGGTCTTTGAGGGTAGTTTAATTCGTGCAATTCGAAGATTGGAAGAAGTTCTTCAACAGCTAGTACTAGCTTCGAGATCTGTAGGCGAGGTTCAGCTAGAATTAAAATTTCAGGAGGCTATTACAAGAATTAAAAGAGACATTGTTTTCGCTGCATCATTGTACTTGTAG___ATTCTAATATAATTTAAAAATTACTAGAAAGTAGGTTTA

Fln Alignment:

Contig3808___VFEGSLIRAIRRLEEVLQQLVLASRSVGEVQLELKFQEAITRIKRDIVFAASLYL
B8LMT3_________________VFEGSLIRAIRRLEEVLQQLVLASKSVGEVQLELKFQEAITRIKRDIVFAASLYL

SNPs (tot: 3)

Position	A %	G %	T %	Probability
43	33		66	0.997452
48	66	33		0.997452
78	33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain