SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3514

Length: 481 nt

UniGene Fasta

>biog2_v2.0_unigene3514
AGAGATAAAAGGTTAGATGTCATTGTAGACAGATACCTCAAGCAGAATTATAATCCAATGGAAGTTGAAGCTATAATCCAGGTAGCATTATTGTGTACACAAACCTCACCTGAAGAACGGCCAAAGATGACAGAAGTTGTACGCATGTTGGAAGGTGAGGGGCTAGCAGAACGCTGGGAGGAATGGCAGCAACAAGAAGTGATTCGTCGACGAGAATATGCACTGATGCCTAGAAGGTTTGAGTGGGCTGAGGATTCTACATATAACCAAGAAGCCATTGAACTATCTGAGGCAAGATGATGATGATCTGTCCGCTGTAAGGAACACTTCTTATTTGAAGCAGCTAATGCCTTTGTATCTAAATTTCTGAAAGTGACTCATTGAGAGCATAAGCTTGTCTCATTTTGTCCTTGTTGAGTGTTTTATCACTGTGACAAAACTCCTATGAAATGTAAGATTACTAGACTTCCATTTGCTTGAC

Ace file of the UniGene biog2_v2.0_unigene3514

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7681	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	putative receptor-like kinase (with alternative splicing) [Oryza sativa Japonica Group] gb\|ABF98430.1\| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed [Oryza sativa Japonica Group] gb\|ABF98431.1\| BRASSINOSTEROID I	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	brassinosteroid insensitive 1-associated receptor kinase 1 expressed	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	87%
Blast2go	integral to membrane	GO:0016021	Cellular Component	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Adenovirus E3 region protein CR2	IPR003470	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSK3

Fln msg: your sequence is shorter than subject: 100 - 606

Fln protein: RDKRLDVIVDRYLKQNYNPMEVEAIIQVALLCTQTSPEERPKMTEVVRMLEGEGLAERWEEWQQQEVIRRREYALMPRRFEWAEDSTYNQEAIELSEAR*

Protein Length: 101

Fln nts: AGAGATAAAAGGTTAGATGTCATTGTAGACAGATACCTCAAGCAGAATTATAATCCAATGGAAGTTGAAGCTATAATCCAGGTAGCATTATTGTGTACACAAACCTCACCTGAAGAACGGCCAAAGATGACAGAAGTTGTACGCATGTTGGAAGGTGAGGGGCTAGCAGAACGCTGGGAGGAATGGCAGCAACAAGAAGTGATTCGTCGACGAGAATATGCACTGATGCCTAGAAGGTTTGAGTGGGCTGAGGATTCTACATATAACCAAGAAGCCATTGAACTATCTGAGGCAAGATGA___TGATGATCTGTCCGCTGTAAGGAACACTTCTTATTTGAAGCAGCTAATGCCTTTGTATCTAAATTTCTGAAAGTGACTCATTGAGAGCATAAGCTTGTCTCATTTTGTCCTTGTTGAGTGTTTTATCACTGTGACAAAACTCCTATGAAATGTAAGATTACTAGACTTCCATTTGCTTGAC

Fln Alignment:

Contig3514___RDKRLDVIVDRYLKQNYNPMEVEAIIQVALLCTQTSPEERPKMTEVVRMLEGEGLAERWEEWQQQEVIRRREYALMPRRFEWAEDSTYNQEAIELSEAR
C0PSK3_________________RDKRLDVIVDSNLKQNYDPMEVEAVIQVALLCTQTSPEERPKMTEVVRMLEGEGLAERWEEWQQQEVIRRREYALMPRRFEWAEDSTYNQEAIELSEAR

SSRs (tot: 1)

Start position	End position	Sequence	Length
296	307	GAT GAT GAT GAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain