SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3448

Length: 462 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene3448
GACCTTACACTGCAAGAAGTAAACAAAGTATCCCAGGTTGTTACTAGCTTAGCAGATCCATCAGCAAATATCATATTTGGAGCTGTCGTTGATGATAGGTATGCAGGAGAAATACACGTAACTATCATTGCTACAGGATTTTCTCAAACTTTTCAAAAACATTAGTAACAGACCCAAAGGTTGCCAGGCAAGAAGCTCAGGAGGCTAAAGGATTGGAGTCTAGTAGAAAAGGTTCAGCTCCTGTTTCTTCTAGGCCTTCTGGTAGGAAGTGGCTTTTATGAAGGGGTGAAATATTTCAGTTGGACTGCAAGTTGCTAGATATATCAAATCCAGAATGCGGGTAACTTCATGATTGTCATGAATACTGCATATTACTGCTCTCTTTATCATTTGTACAAGAGGCAGTGGTGGCTTAAGCAGGAACGTAAAAACTACATTATAGAGACCACGCTTCTTTCATTT

Ace file of the UniGene biog2_v2.0_unigene3448 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5043	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	FtsZ1 n=1 Tax=Marchantia polymorpha RepID=Q84K12_MARPO	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	cell division protein ftsz homolog chloroplastic-like	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	chloroplast relocation	GO:0009902	Biological Process	87%
Blast2go	cell division	GO:0051301	Biological Process	87%
Blast2go	protein polymerization	GO:0051258	Biological Process	87%
Blast2go	response to blue light	GO:0009637	Biological Process	87%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	87%
Blast2go	microtubule-based process	GO:0007017	Biological Process	87%
Blast2go	chloroplast fission	GO:0010020	Biological Process	87%
Blast2go	identical protein binding	GO:0042802	Molecular Function	87%
Blast2go	protein self-association	GO:0043621	Molecular Function	87%
Blast2go	GTPase activity	GO:0003924	Molecular Function	87%
Blast2go	structural molecule activity	GO:0005198	Molecular Function	87%
Blast2go	GTP binding	GO:0005525	Molecular Function	87%
Blast2go	microtubule	GO:0005874	Cellular Component	87%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSV8

Fln msg: Overlapping hits, possible frame ERROR between 159 and 150, your sequence is shorter than subject: 94 - 439

Fln protein: DLTLQEVNKVSQVVTSLADPSANIIFGAVVDDRYAGEIHVTIIATGFSQxxxxxLVTDPKVARQEAQEAKGLESSRKGSAPVSSRPSGRKWLL*

Protein Length: 95

Fln nts: GACCTTACACTGCAAGAAGTAAACAAAGTATCCCAGGTTGTTACTAGCTTAGCAGATCCATCAGCAAATATCATATTTGGAGCTGTCGTTGATGATAGGTATGCAGGAGAAATACACGTAACTATCATTGCTACAGGATTTTCTCAAxxxxxxxxxxxxxxxTTAGTAACAGACCCAAAGGTTGCCAGGCAAGAAGCTCAGGAGGCTAAAGGATTGGAGTCTAGTAGAAAAGGTTCAGCTCCTGTTTCTTCTAGGCCTTCTGGTAGGAAGTGGCTTTTATGAAGGGGTGAAATATTTCAGTTGGACTGCAAGTTGCTAGATATATCAAATCCAGAATGCGGGTAACTTCATGATTGTCATGAATACTGCATATTACTGCTCTCTTTATCATTTGTACAAGAGGCAGTGGTGGCTTAAGCAGGAACGTAAAAACTACATTATAGAGACCACGCTTCTTTCATTT

Fln Alignment:

Contig3448___DLTLQEVNKVSQVVTSLADPSANIIFGAVVDDRYAGEIHVTIIATGFSQTxxxTLVTDPKVARQEAQEAKGLESSRKGSAPVSSRPSGRKWLL
C0PSV8_________________DLTLQEVNKVSQVVTSLADPSANIIFGAVVDDRYAGEIHVTIIATGFSQTxxxALVTDPKVAKQEAQEAKGLESSRKGSAPVSSRPSGRKWLL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
123		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain