SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3387

Length: 1354 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene3387

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10444	25/25

Source	Descriptions	Term	Type	Identity
AutoFact	DUF760 domain containing protein	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	uncharacterized protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF760	IPR008479	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPW2

Fln msg: your sequence is shorter than subject: 264 - 434

Fln protein: YALIVQKFMDARISLIPCISMPDSVTGQIDTWPKQDHKLEGVHSSEAFEMIKNHLALVLGNRLLDTSSIAQISKLRVGQVYAASVMYGYFLRRVDQRFQLEKSMKTLPYGLNEESDAEQPLGSDSKTKGDFQTRYSSPQVASAAMPSIGTPSEPEFNPTVYGSRGVKPCKLRAYVMSFDPETLQRYATMRSKEGVGIIERHSEALFGRPEVQVVGGSTAATNDEIIKISFSGLTSLVLEAVTFGSFLWDVESYVDSRCHFVTN*

Protein Length: 265

Fln nts: TCTATGCCCTTATAGTTCAAAAATTCATGGATGCCAGGATTTCCTTGATCCCATGTATTTCAATGCCTGATTCTGTGACTGGGCAAATTGATACATGGCCCAAACAAGACCACAAGCTTGAGGGGGTACATTCTTCCGAGGCCTTTGAGATGATAAAGAATCACCTAGCCCTTGTTCTTGGCAATCGCTTGTTAGACACCAGTTCTATTGCCCAGATTAGTAAGCTGCGAGTAGGGCAAGTATATGCAGCATCAGTTATGTATGGATACTTTTTGAGAAGAGTGGACCAACGTTTCCAGCTTGAGAAAAGCATGAAAACTCTTCCCTACGGATTGAATGAAGAATCGGATGCGGAGCAGCCTCTGGGTAGTGACTCTAAAACCAAGGGTGATTTCCAGACACGGTACTCATCTCCACAAGTTGCTTCTGCAGCAATGCCTAGTATAGGAACACCGTCAGAACCAGAATTCAACCCAACAGTTTATGGTAGCAGGGGAGTGAAGCCTTGTAAATTGAGAGCGTATGTGATGTCCTTTGATCCAGAGACCTTGCAGAGGTATGCGACAATGAGGTCTAAGGAAGGAGTCGGTATAATTGAGAGGCATTCTGAAGCCCTATTTGGAAGGCCTGAAGTTCAGGTTGTAGGTGGGTCTACGGCAGCTACAAACGATGAAATAATTAAGATAAGTTTTTCAGGCTTGACAAGTCTGGTTTTAGAAGCTGTCACTTTTGGCAGCTTTCTTTGGGATGTTGAAAGCTACGTGGACTCCAGGTGCCATTTTGTAACAAACTAG___CTTTAAGGGCCATGTTGCAGTATCAGCTGTAAATATGAAGATTGTGACTTTCAGCGATACCTCTAAAAGTTTTGACCCAGATACATGCAAACAGTAGCTTTCTTTGATGACATTCACATGCTCTCTGGATGATAGTTCCAAGTTTATGGCTCAACATTATGTCCTTACTGTTCCTTTATTACCAAAAAATCCTTGCTCTCCACAAAAGATCCCTTTGTAAATATCTGAGACTGTGATCAGATTGAAGGATCTGTCCTCTACGCAACAACTTCTCATTAACAAGGATATCCAGTTGGTAACGTGTTTATTCTACCTGGCTTGTACGTGCATTAGTTGACTTGCTATTGCATGCATCCATTTACGTTTACAGACCCCAGAATCACATGTTGGTCCATACTGGAGGAAATTTATATGAACAGTACCGATCTTCATCGAGAATATCGTGGAAGATCTTTAATTCTATTTCTATCATTTTGATTTTAGGTTCATTTCATTGCCATGCATTGTTCATCTATGTTGCACTGTACTCCGAAGCAAGAAAATATCGCTTTTTAAAGGGT

Fln Alignment:

Contig3387___YALIVQKFMDARISLIPCISMPDSVTGQIDTWPKQDHKLEGVHSSEAFEMIKNHLALVLGNRLLDTSSIAQISKLRVGQVYAASVMYGYFLRRVDQRFQLEKSMKTLPYGLNEESDAEQPLGSDSKTKGDFQTRYSSPQVASAAMPSIGTPSEPEFNPTVYGSRGVKPCKLRAYVMSFDPETLQRYATMRSKEGVGIIERHSEALFGRPEVQVVGGSTAATNDEIIKISFSGLTSLVLEAVTFGSFLWDVESYVDSRCHFVTN
B8LPW2_________________YALIVQKFMDARISLIPCISMPDPVTGQIDTWPKQDHKLEGVHSSEAFEMIKNHLSLVLGNRLLDSSSIAQISKLRVGQVYAASVMYGYFLRRVDQRFQLEKSMKTLPSGLNEESDAEQTLGSDSKTKGEFQTRYSSPQVASAAMPSIGTPSEPEFNPTVNGRRGVKPCKLRAYVMSFEPETLQRYATMRSKEGVSIIEKHSEALFGRPEVQVVGGSVAATNDEIIKISFSGLTSLVLEAVTFGSFLWDVESYVDSRYHFVTN

SNPs (tot: 6)

Position	C %	G %	T %	Probability
1010	50		50	1.0
1027	87		12	0.992554
1028		12	87	0.992554
1030		12	87	0.992554
1066	14		85	0.993533
1334		66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain