SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3363

Length: 1329 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene3363

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8235	6/17
SustainPine v2.0	sp_v2.0_unigene28041	11/17

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alcohol dehydrogenase transcription factor myb/SANT-like protein [Arabidopsis thaliana] gb\|AAC27475.1\| unknown protein [Arabidopsis thaliana] gb\|AEC10459.1\| Alcohol dehydrogenase transcription factor myb/SANT-like protein [Arabidopsis thaliana]	-	-	5.0e-22	54%
FL-Next	tr=Transcription factor, putative; Ricinus communis (Castor bean).	-	-	0.0	36%
Blast2go	alcohol dehydrogenase transcription factor myb sant-like protein	-	-	1.4013e-45	62%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	MADF domain	IPR006578	-	-
Sma3	Myb-like domain	IPR017877	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9S517

Fln msg: your sequence is shorter than subject: 264 - 291

Fln protein: MAMAAASSSSGGGQQDDGGGGGIVAPHMIIHRKPPGPWTEVETNHLIDAYQEKWYALKRGQLKARHWEEVANLVFLRCGGLEPSKSSVQCRHKIEKLRKRYRTEKQQQGITRGSRRVFFERMDQLENGPRADSVIVPNGRQLTEHDSDTEEWKRGRKICRIVQIERQETEYRTPVTTTPISIPTPASAPAVLRVGRCYRSLGEGFLRIEQMKLEMQRDNERLRMEMEMKRTEMILESQQHMADVIARALSSKKRAKRLQSPDL*

Protein Length: 265

Fln nts: CCCTCGACCAACAAAACCACAGATCCCGCCTCTCACAGCACCGCCACCACCACCGGCAGAGCCAGATTTGGAGAAAAACCAGGTCTTTGTTGCAGCTGCTAGCCAGTCAAGGATTCAAGAATA_-_ATGGCCATGGCCGCCGCGTCCTCATCCTCAGGAGGAGGCCAACAGGACGATGGAGGAGGCGGGGGAATCGTCGCCCCACATATGATAATCCACAGAAAACCGCCAGGCCCCTGGACGGAGGTGGAGACCAACCACCTGATCGACGCCTACCAGGAGAAATGGTATGCCTTGAAGCGCGGCCAGCTGAAGGCTAGGCACTGGGAAGAGGTAGCCAACCTCGTATTCCTGCGTTGCGGGGGACTCGAACCCTCGAAGTCCTCCGTCCAGTGCCGCCACAAGATCGAGAAGCTCCGCAAGAGATACCGGACAGAGAAGCAGCAGCAGGGGATCACGCGGGGTTCCAGGCGGGTTTTCTTCGAGCGGATGGATCAGCTTGAGAACGGCCCTAGGGCGGATTCCGTTATCGTTCCCAACGGACGGCAACTGACGGAGCATGATTCCGACACGGAAGAATGGAAGCGTGGACGGAAAATTTGCCGCATCGTCCAGATTGAACGTCAAGAGACGGAGTATCGAACCCCCGTCACAACAACCCCAATTTCAATCCCAACCCCCGCCTCAGCCCCAGCCGTCCTCCGAGTTGGCCGCTGTTATCGATCCCTGGGCGAGGGTTTCTTGAGAATCGAGCAGATGAAGCTGGAAATGCAGAGGGACAATGAACGGCTGAGAATGGAGATGGAAATGAAACGGACGGAGATGATTCTCGAATCACAGCAGCACATGGCTGATGTTATCGCCAGGGCCTTGTCTTCGAAAAAGAGGGCCAAGAGATTGCAATCCCCGGATTTGTAG___ATTTGTCCACAGTGGGCAAAATCTAAATGTGGCAAGAGTGCATGGAGCAGTTTTACGTGTATGGAATCATATACTTATGCTGGAGGGTAACTTGGGCCAGATTGTATGCTGTGAGGCTATTGTCCATAGACAAACAAGTTTCTCAAGACTTGGTGGTCTAAGATTGCAGAGAGTTGTAGATCCAAGAAGAGCCATGTGAAACATCAGCTAAGTCTGGTCTGAAGGAATAAGAGATCCTTTACTGTGTTGGGAATATTGAACAACTACTTTGTGGTTTTGAGGAATGTATAGCAGTAGCAGCTAGGATGAAAGGCTTTGATCAATTGTGTTGAAGGCTATATGATGCTGTATAAAATGTAATGAACACTCGAATCATAGGCAAGTTTTTGTAAATAGATTGTCAAACATGAAGAC

Fln Alignment:

Contig3363___RKP-PGPWTEVETNHLIDAYQEKWYALKRGQLKARHWEEVANLVFLRCG--GLEPSKSSVQCRHKIEKLRKRYRTEKQQQGITRGSRRVFFERMDQLENGPRADS----VIVPNGRQLTEHDSDTEEWK----------RGRKICRIVQ-------------------IERQETEYRXXXXXXXXXXXXXXXXXXXLRVGRCYRSLGEGFLRIEQMKLEMQRDNERLRMEMEMKRTEMILESQQHMADVIARALSSKKRAKRLQ
B9S517_________________KKPHPVPWTHQETVHLIQAYQEKWYSLKRGQLKANQWEEVAETVAARCGYEYNHLAKTVIQCRHKMEKLRKRYREERRRLSLNGTCFWQYFDLMDSLERGPLPISARPLTLIP-GNDDNEEDDDEEEEEEEEEEYGYRSRSLSINYILQKPTIVNRFAGSDSRLLPAVMNKRKREEIVEEEEQEEEEEEDSGKSVELELAGEIRAFTERIVGMERKKMQMMKETERWRMEMENKRIEMILDSQRKIVDMISTAFGSPEDLKMEQ

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
237		33	66		0.997452
239		66		33	0.997452
242	66		33		0.997452
334	33		66		0.997452
818		66		33	0.997452
821	66		33		0.997452
921			25	75	0.996473
922			25	75	0.996473
928		80		20	0.995493
929	80		20		0.995493
931			20	80	0.995493
954			85	14	0.993533
955	85		14		0.993533
957			14	85	0.993533
1104			88	11	0.923564
1105	77		11		0.968132
1106	88		11		0.923564
1141	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain