SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3280

Length: 1457 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene3280

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15526	40/40

Source	Descriptions	Term	Type	Identity
AutoFact	Os07g0631900 protein n=2 Tax=Oryza sativa RepID=Q8LHN4_ORYSJ	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	rna-binding protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	77%
Blast2go	innate immune response	GO:0045087	Biological Process	77%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	77%
Blast2go	poly(U) RNA binding	GO:0008266	Molecular Function	77%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	77%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	77%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	77%
Blast2go	stromule	GO:0010319	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTU4

Fln msg:

Fln protein: MAAASSCVFSSSSIISNDRLSASSRRLDPATKRKAVAPADIVCMISSPNCAGTRSCSLAAVFCGVPLFSSPQKNNNNLFLARSVTMAPQQSSEWEEEEEEIENRIPSADIKVFVGNLPWSVDSAELAELFKDAGDVTMVEVIYDRQTGRSRGFAFVTMATQEDADSAVEKLNGYEYQGRTLRVNSGPPPPKDSFAPRGGFRNEKPSGNFNSANRAFVGNLPWGADDLSLEQLFSDYGKVVEARVVYDRETGRSRGFGFVTLSSPQEIEEAISSLDGSEMDGRQIRVNVAETKPASF*

Protein Length: 298

Fln nts: ATGGGGCTACCACACAAAAGACATATTTTATGAACTCAGCTTTGTGACTTATTATCTTCGACAAGTTTAGATGTTTGGAGAAGATATTATTATTGATTCAGCCAAATGAAGCAGCATCCCTGATTCCCCACCTTATCCGTTCGCCTTCCTTTTAATGCCTGGTAGCCAGGGCTTGAGTTCCTATTCCATTTCATTTCGTAGGCAGGTTTAGAGCTAAGGTTGCAAGAGATCAACATATATTTCCTGAGTCTCCCTCGTCCCTCTCC_-_ATGGCGGCCGCATCATCGTGTGTATTCAGTTCGTCGTCCATTATCAGCAATGACCGCTTGAGCGCCTCTTCGAGGCGTCTCGACCCTGCGACCAAGAGGAAGGCGGTGGCGCCTGCAGACATTGTCTGTATGATATCATCACCTAATTGTGCGGGGACTCGATCCTGTTCCCTTGCGGCGGTATTTTGCGGGGTACCGCTGTTTTCATCTCCACAGAAAAATAATAATAATTTGTTTCTAGCAAGAAGTGTAACAATGGCGCCTCAGCAGTCTTCTGAATGGGAAGAAGAAGAAGAAGAGATTGAGAACCGCATTCCTTCAGCAGACATCAAAGTATTTGTGGGGAATCTGCCCTGGAGTGTCGACAGTGCCGAGTTAGCAGAGCTTTTCAAGGACGCGGGCGATGTCACAATGGTTGAGGTAATATATGACCGACAAACAGGAAGAAGTCGTGGTTTTGCATTTGTGACAATGGCAACGCAAGAAGATGCTGATTCAGCTGTGGAGAAGTTAAATGGATATGAATACCAGGGCAGAACCTTGAGGGTGAACTCAGGGCCACCACCCCCAAAAGATAGTTTTGCACCAAGAGGCGGATTTAGAAATGAAAAGCCCAGTGGCAATTTTAATTCTGCCAATAGAGCTTTCGTGGGGAATCTGCCTTGGGGAGCTGATGATCTTAGCCTAGAACAACTTTTTAGCGATTACGGCAAAGTTGTGGAAGCCAGAGTTGTGTATGATCGAGAGACTGGAAGGTCAAGGGGTTTTGGTTTTGTCACCCTTTCGTCCCCTCAGGAAATAGAGGAGGCAATATCTTCTCTTGATGGATCGGAAATGGATGGGAGGCAAATAAGAGTGAATGTAGCTGAGACAAAGCCTGCCAGCTTTTGA___TTGTTGAAGCATGGGCCTTTTGCTACCCTGCTTTACTTGAAGCTTGCTTTCAGCTTAGCTTTTCCTTTAATCACTAGTTCTTGTACTACAGTTTTAGCCGACAAGGATATTTGCTATCCTCTCGACAGAACAAGAGGCTGTTTATGACGTTTAATAGATGAATAATTTTTTGTATGATTGCTGTTGTGTACTTACATAGATGGAAGTTTATTAGCGTTGTATTTTGTCTTGCTCAACTTCAAACGGAGCAAACCTGCTCTTCTTTCTAAAGTTATTTACAATAACAGCCAATTTTAAGTT

Fln Alignment:

Contig3280___RRLDPATKRKAVAPADIVCMISSPNCAGTRSCSLAAVFCGVPLFSSPQKNNNNLFLARSVTMAPQQSSXXXXXXXXXX-NRIPSADIKVFVGNLPWSVDSAELAELFKDAGDVTMVEVIYDRQTGRSRGFAFVTMATQEDADSAVEKLNGYEYQGRTLRVNSGPPPPKDSFAPRGGFRNEKPSGNFNSANRAFVGNLPWGADDLSLEQLFSDYGKVVEARVVYDRETGRSRGFGFVTLSSPQEIEEAISSLDGSEMDGRQIRVNVAETKPASF
A9NTU4_________________KRLDPATKRKAGAPVEIVSMISSPNCAGTRSFSLAAGFCGVPLFSSTHKKNNNSFLARSVTMAPRQASEWEEDEEEDIENSSPSANLKVFVGNLPWSVDSAELAELFKDSGDVTMVEVIYDRQTGRSRGFAFVTMATQADADEAVEKFNGYEYQGRTLRVNSGPPPPKDSFAPRGGFRNEKPSGNYNSANRVFVGNLPWGADDLSLEQLFSDHGKVMEAKVVYDRETGRSRGFGFVTLSSPQEIEEAISSLDGSDMDGRQIKVTLAETKPASF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
885			80	20	0.995493

SSRs (tot: 2)

Start position	End position	Sequence	Length
486	497	AAT AAT AAT AAT	12
549	565	GAA GAA GAA GAA GAA GA	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain