SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3227

Length: 929 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene3227

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18203	25/27
SustainPine v2.0	sp_v2.0_unigene31915	1/27

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen caleosin n=1 Tax=Lilium longiflorum RepID=A8B479_LILLO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	ca+2-binding ef hand protein	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Lipoxygenase.	EC:1.13.11.12	-	0.0	74%

Source	KEGGs	Term	Identity
Blast2go	Linoleic acid metabolism	00591	74%
Blast2go	alpha-Linolenic acid metabolism	00592	74%
Blast2go	Biosynthesis of plant hormones	01070	74%
Blast2go	Metabolic pathways	01100	74%

Source	GOs	Term	Type	Identity
Blast2go	oxylipin metabolic process	GO:0031407	Biological Process	74%
Blast2go	stomatal movement	GO:0010118	Biological Process	74%
Blast2go	response to fungus	GO:0009620	Biological Process	74%
Blast2go	response to salt stress	GO:0009651	Biological Process	74%
Blast2go	response to desiccation	GO:0009269	Biological Process	74%
Blast2go	response to cold	GO:0009409	Biological Process	74%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	74%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	74%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	74%
Blast2go	lipoxygenase activity	GO:0016165	Molecular Function	74%
Blast2go	microsome	GO:0005792	Cellular Component	74%
Blast2go	chloroplast membrane	GO:0031969	Cellular Component	74%
Blast2go	vacuole	GO:0005773	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Caleosin	IPR007736	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
14	75			25	0.996473
15	75	25			0.996473
16	25			25	0.995533
33	50		50		1.0
91			50	50	1.0
111		50		50	1.0
126	83	16			0.994512
128			33	66	1.0
129	83		16		0.994512
130			16	83	0.994512
131	16		83		0.994512
134		28	71		1.0
186	14		85		0.993533
190	85		14		0.993533
243	85		14		0.993533
257	85		14		0.993533
777	10		90		0.90298
835	14		85		0.993533
840	83		16		0.994512
841	16	83			0.994512
878	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain