SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene3125

Length: 1470 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene3125

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9904	22/23

Source	Descriptions	Term	Type	Identity
AutoFact	translation initiation factor nCBP [Triticum aestivum]	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	cap-binding protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	88%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	88%
Blast2go	cytoplasm	GO:0005737	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation Initiation factor eIF- 4e	IPR001040	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P259

Fln msg: Overlapping hits, possible frame ERROR between 481 and 472,

Fln protein: MELSEKSDGRGLVRTPSRPELIPNDRPPLLPLTAEMINKEKDDRARREREAEERERQSRELKAGLHPLQHRFVFWYLRRQPGVRSQASYEENxxxxxEFSTVEGFWVCYCHFARVSSMPNPTNLHLFKEGLRPLWEDPGNRNGGKWIIRLNKAVSGRFWEDLVLALVGDQLDYGDDVCGIVLSVRFGEDILSVWNRNASDGQAVMVLRDSIKKHLHLPASYLMEYKPHDAALRDNSSYRNTWLRG*

Protein Length: 247

Fln nts: ATGGGGATTGGCAAAGTATCTGACAGTATTTTATTAGAGCAGTGTTCAAATATTTTACATCTTTCTGCGTCTATATTTATGTGCATTTGAGATATTTTCTTGTATTGCAAAGCGGCCAGCTGGAGCGAAACACCGAAGTCGATTGCTAGAACAAACCCCCAATTCGGCAGAGAAATCTGAAACCATACCATCA_-_ATGGAGCTTTCAGAAAAATCCGATGGCAGAGGACTTGTAAGGACTCCATCTCGTCCTGAATTGATACCGAACGACCGCCCGCCGTTGTTGCCCCTCACTGCAGAAATGATCAACAAGGAAAAAGACGACAGAGCACGACGCGAGAGAGAAGCAGAAGAAAGGGAACGCCAAAGCAGAGAGCTCAAAGCCGGACTCCATCCTTTACAGCATCGATTTGTTTTCTGGTACCTTCGTCGACAACCTGGAGTTAGATCACAAGCATCATATGAGGAAAACxxxxxxxxxxxxxxxGAGTTCAGCACTGTGGAAGGCTTTTGGGTTTGCTATTGCCATTTTGCTCGGGTTTCTTCTATGCCAAACCCAACAAATTTGCACCTTTTCAAAGAGGGTCTTCGACCTTTATGGGAGGACCCAGGAAATCGTAATGGTGGGAAGTGGATAATTCGGCTGAATAAGGCTGTCTCAGGCAGGTTTTGGGAAGACTTGGTACTAGCGCTGGTAGGCGATCAGCTGGATTATGGTGATGATGTATGTGGTATTGTATTGAGTGTTCGCTTTGGGGAGGACATTCTCAGTGTTTGGAATAGAAATGCTTCTGATGGCCAGGCAGTAATGGTATTGAGAGATTCAATCAAGAAACATCTTCACCTTCCTGCCAGCTACCTGATGGAGTACAAGCCACACGATGCAGCATTACGAGATAATTCGTCATACAGAAACACTTGGTTGAGGGGATGA___TTGAGGTGTTCAGCATGCTGTTAAATTATTGACGTTCTGTATCATCAGTACTCTAGTCATTTCAGTTTTTCAGAAGTGTAGGGGAGTGTTCAAGTTCTCCTCAAATCTGTATCATGTTGATGTATAATCTTGCAGAGCAGCATGTGTTTCTTTGGGTCACATCAATCGTATTCATCATTGCATACTGCCAAACGCTGGATCACAATCTGAAATTTTCATGTCTCATTTTCCTAACCATTTAGTTTCTAATTGCTGGTCCATGTGGCACTAAAGCTTTAGTCATGAAAGCAACTTATGATCCAGAGGTACAAAGTTCAAACATGGTAGTATTTTCCTGGAAGATACATTGACTATTACTGGTAAGGCGAGCTACATAGAGATCATGGGCAGTGATAGGCACAGAGGTCTTTCAAAATTTGAATGAAAACTAACTAGATTTTCAACTACATACTCTGCAGACATTAAACTCGGTTGTATTTTGAAATTGAACTTCTTAATTGTTTAGATAATTCGGAGAATATCTTAACAAAGAATGCAGTA

Fln Alignment:

Contig3125___MELSEKSDGRGLVRTPSRPELIPNDRPPLLPLTAEMINXXXXXXXXXXXXXXXXXXQSRELKAGLHPLQHRFVFWYLRRQPGVRSQASYEENMxxxVEFSTVEGFWVCYCHFARVSSMPNPTNLHLFKEGLRPLWEDPGNRNGGKWIIRLNKAVSGRFWEDLVLALVGDQLDYGDDVCGIVLSVRFGEDILSVWNRNASDGQAVMVLRDSIKKHLHLPASYLMEYKPHDAALRDNSSYRNTWLRG
A9P259_________________MELSEKSDGRGLVRTPSRPELIPNERPPLLPLTAEMINKEKEDRARREKEAEERERHSRELRAGLHPLQHRFVFWYLRRQPGVRSQASYEENMxxxVEFSTVEGFWVCYCHFARVSSMPNPTNLHLFKEGIRPLWEDPGNRSGGKWIIRLNKAVSGRFWEDLVLAMVGDQLDYGDDVCGIVLSVRFGEDILSVWNRNASDGQAVMVLRDSIKKHLHLPASYLMEYKPHDAALRDNSSYRNTWLRG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
192			66	33	0.997452
335		75		25	0.996473
764		14		85	0.993533
797		50		50	1.0
835	83		16		0.994512
867		16		83	0.994512
882			80	20	0.995493
1002		33		66	0.997452
1003		80		20	0.995493
1074	75		25		0.996473
1171			16	83	0.994512
1172			16	83	0.994512
1173	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain