SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2942

Length: 524 nt

UniGene Fasta

>biog2_v2.0_unigene2942
ATGGAGTCCATGTTGATAATGGCCGGATTAAAGGTGCTCAAAAAAAGCATTGCGAAACTTGATTGAGAAGTACGGCTTAAGTGTCCGTCTTACCCCAAACCAGAACCTCATCTTGTGTGATATTCGCAATTACTGGAAAAGACATGTCACTAGTATTCTTTCTCAAGCTGGCTTACTGGATTCAAGTTATGTTGATCCTCTAAATGTGACAGCCATGGCATGCCCTGCCTTACCGTTATGTCCTCTTGCTATAACAGAGGCAGAACGTGGAAGTCCTGATATTATTAAAAGGGTCCGTGCTGTGTTTGAAAAGGTTGGGTTAAAGTACACGGATTCAATTGTGATAAGGTTCACTGGATGCCCTAATGGTTGTGCAAGACCGTACATGGCTGAGCTAGGCTTTGTGGGAGATGGACCGAACAGCTATCAGATTTGGCTTGGTGGGACACCTAACCAAACACAACTTGCAAAACCCTTCATAGACAAGGTCAAAGTGCAAGAATTGGAAAAAGTTCTGGAGCCTC

Ace file of the UniGene biog2_v2.0_unigene2942

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene266	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	sulfite reductase [Nicotiana tabacum] dbj\|BAA33796.1\| sulfite reductase [Nicotiana tabacum]	-	-	70%
FL-Next	sp=Ferredoxin--nitrite reductase, chloroplastic; Spinacia oleracea (Spinach).	-	-	26%
Blast2go	sulfite reductase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sulfite reductase (ferredoxin).	EC:1.8.7.1	-	0.0	85%

Source	KEGGs	Term	Type	Identity
Blast2go	Sulfur metabolism	00920		85%
Blast2go	Metabolic pathways	01100		85%
Blast2go	Sulfite reductase.	EC:1.8.99.1	-	85%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sulfur metabolism	00920		0.0	85%
Blast2go	Metabolic pathways	01100		0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	85%
Blast2go	sulfate reduction	GO:0019419	Biological Process	85%
Blast2go	response to salt stress	GO:0009651	Biological Process	85%
Blast2go	copper ion binding	GO:0005507	Molecular Function	85%
Blast2go	sulfite reductase (ferredoxin) activity	GO:0050311	Molecular Function	85%
Blast2go	heme binding	GO:0020037	Molecular Function	85%
Blast2go	sulfite reductase activity	GO:0016002	Molecular Function	85%
Blast2go	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	85%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	85%
Blast2go	stromule	GO:0010319	Cellular Component	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%
Blast2go	membrane	GO:0016020	Cellular Component	85%
Blast2go	apoplast	GO:0048046	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like	IPR005117	-	-
Sma3	Nitrite/sulphite reductase iron-sulphur/siroheam-binding site	IPR006066	-	-
Sma3	Nitrite/sulphite reductase 4Fe-4S domain	IPR006067	-	-
Sma3	Sulphite reductase, ferredoxin dependent	IPR011787	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P05314

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 26 aas, your sequence is shorter than subject: 174 - 594

Fln protein: WSPC**WPD*RCSKKALRNLIEKYGLSVRLTPNQNLILCDIRNYWKRHVTSILSQAGLLDSSYVDPLNVTAMACPALPLCPLAITEAERGSPDIIKRVRAVFEKVGLKYTDSIVIRFTGCPNGCARPYMAELGFVGDGPNSYQIWLGGTPNQTQLAKPFIDKVKVQELEKVLEP

Protein Length: 175

Fln nts: ATGGAGTCCATGTTGATAATGGCCGGATTAAAGGTGCTCAAAAAAAGCATTGCGAAACTTGATTGAGAAGTACGGCTTAAGTGTCCGTCTTACCCCAAACCAGAACCTCATCTTGTGTGATATTCGCAATTACTGGAAAAGACATGTCACTAGTATTCTTTCTCAAGCTGGCTTACTGGATTCAAGTTATGTTGATCCTCTAAATGTGACAGCCATGGCATGCCCTGCCTTACCGTTATGTCCTCTTGCTATAACAGAGGCAGAACGTGGAAGTCCTGATATTATTAAAAGGGTCCGTGCTGTGTTTGAAAAGGTTGGGTTAAAGTACACGGATTCAATTGTGATAAGGTTCACTGGATGCCCTAATGGTTGTGCAAGACCGTACATGGCTGAGCTAGGCTTTGTGGGAGATGGACCGAACAGCTATCAGATTTGGCTTGGTGGGACACCTAACCAAACACAACTTGCAAAACCCTTCATAGACAAGGTCAAAGTGCAAGAATTGGAAAAAGTTCTGGAGCCTC

Fln Alignment:

Contig2942___LRNLIEKYGLS-VRLTPNQNLILCDIRNYWKRHVTSILSQAGLLDSSYVDP--LNVTAMACPALPLCPLAITEAERGSPDIIKRVRAVFEKVGLKYTDSIVIRFTGCPNGCARPYMAELGFVG
P05314_________________LARIADVYGSGELRLTVEQNIIIPNVEN---SKIDSLLNEPLLKERYSPEPPILMKGLVACTGSQFCGQAIIETKARALKVTEEVQRL-----VSVTRPVRMHWTGCPNSCGQVQVADIGFMG

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
77	33	66			0.997452
79			33	66	0.997452
80	66		33		0.997452
81	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain