SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2930

Length: 1274 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2930 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17416	1/29
SustainPine v2.0	sp_v2.0_unigene25384	27/29
SustainPine v2.0	sp_v2.0_unigene61194	1/29

Source	Descriptions	Term	Type	Identity
AutoFact	14-3-3 domain containing protein	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	14-3-3 protein	-	-	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPV7

Fln msg:

Fln protein: MAAAAMVESSREENVYMAKLAEQAERYEEMVEFMEKVTKGVEVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDEHVVTIREYRAKVEAELSKICEGILRLLDSHLIPSSTAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLLAYKSAQDIAAAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEDSYKDSTLIMQLLRDNLTLWTSDMQEDAGEEIKETSKREDGEEQ*

Protein Length: 266

Fln nts: ATGGGGGCCCTCGCTCCCCCTGTACTGCCCTTGGTTGTCTTGTGCTGCTGCTTTCACAGAAATTCCAGTCACAGTTCTTGGTTCTGCCATTTTAGTGTGTTTGTGCATTGCAGTGGCCGTTTCTTTGAAGATCCAGAAGTGAAGTTAGGTTTTTAATATCTGTGTACAA_-_ATGGCGGCAGCGGCGATGGTGGAGTCATCGCGGGAGGAGAATGTCTACATGGCGAAGCTGGCTGAGCAGGCGGAGCGCTACGAAGAGATGGTGGAGTTCATGGAGAAAGTGACAAAAGGCGTGGAGGTGGAGGAGCTCACAGTGGAGGAGCGGAACCTGCTATCTGTAGCCTACAAAAACGTGATCGGTGCCCGCAGGGCCTCCTGGAGAATTATTTCCTCCATCGAGCAGAAGGAGGAGAGCAGGGGCAATGATGAGCACGTGGTCACCATCAGGGAGTACAGGGCCAAGGTGGAAGCGGAGCTTTCCAAGATCTGTGAGGGCATTCTCCGCCTTCTCGACTCCCACCTCATCCCTTCTTCCACCGCTGCGGAGTCCAAGGTTTTCTATCTCAAGATGAAGGGCGATTACCATCGATACCTCGCCGAGTTTAAGACAGGCGCCGAGAGGAAGGAGGCCGCTGAGAACACTCTACTTGCTTACAAGTCTGCTCAGGATATTGCTGCGGCAGAGCTGGCTCCAACGCATCCTATTAGGCTAGGGCTGGCTCTTAACTTCTCTGTATTTTACTATGAGATTTTGAATTCGCCAGACAGAGCCTGTAATCTCGCAAAACAGGCATTTGATGAGGCAATTGCGGAGTTAGATACCTTAGGTGAAGATTCTTACAAGGACAGCACTCTCATCATGCAGCTCCTTCGTGACAATCTGACATTGTGGACCTCAGACATGCAGGAGGATGCTGGGGAAGAGATCAAAGAGACTTCTAAGCGTGAGGATGGGGAGGAGCAATAG___TGAAATGTGATAATCTTATACTGTATTAGGATTAGGATTAGATTACCAGGCTTTCCTGCATTGTTTGGTAAAGGAGGCCTACGTGCACGATCGTGTTTATTAGATCTCATGCTCTGCAGCATTTAGTTGCTGTTGGTAGCATATTCTTAGTCATATTTTGTTGGCTACGCTTATGTTGGCATTTTATATCATCTATTTGCGAATGGTTGGAGACAGTGGCTTGGTACTGTAATATCAGATTGGTGGAGTCTATCAACAAATCTGTAGGCCCATTCTGCTTTTGTGTTCAATAATATTTTTTATTGTCTTG

Fln Alignment:

Contig2930___MAAAAMVESSREENVYMAKLAEQAERYEEMVEFMEKVTKGVEVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDEHVVTIREYRAKVEAELSKICEGILRLLDSHLIPSSTAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLLAYKSAQDIAAAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEDSYKDSTLIMQLLRDNLTLWTSDMQEDAGEEIKETSKREDGEEQ
C0PPV7_________________MAAAAMVESSREENVYMAKLAEQAERYEEMVEFMEKVTKGVEVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDEHVVTIREYRSKVESELSKICEGILRLLDSHLIPSSTAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLLAYKSAQDIAAAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEDSYKDSTLIMQLLRDNLTLWTSDMQEEAGDEIKETSKRDEGEEQ

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1080		16	83		0.994512
1082		16	83		0.994512
1214		33		66	0.997452
1215		33	66		0.997452
1216		33	66		0.997452
1218	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain