SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2903

Length: 469 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene2903
TATTGGCGAGTACAGCACTAATGTCAGGTGGATGCTTCTAGGTTTTGTTGGTGAAACTGACCAAGGCATTCTCGAGTTTTCCAAGGGCTGCCCAAAGCTGGAAAGGCTAGAAATTAGAGGTTGTTGTTTTAGTGAATCTGCATTGGCAGCTGCAGTGCTTCAGCTGAAATCACTGAAGTACATATGGGTTCAAGGATATAATGCAACTGTTACTGGTGCTAACCTTCTAGCGATGGCTCGACCTTATTGGAACATAGAGTTTTCTCCTGCTTTGCAATCGAGTGATGTGTATGCTGAAGATGTGGCAGAAGGAAAAAACAGGATCAGGTAGCACAACTTTTGGCCTACATTCTCTTGCTGGAAGGAGGACAGATCACCCAGAGTCCATAATTCCCTTAGCCCCACCTTTCCGGAATTACCATCAAGTAGCTGTCTTCTAATGTGAATATCTATATAAAATATGAGTCCC

Ace file of the UniGene biog2_v2.0_unigene2903 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene988	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	coronatine-insensitive 1 [Solanum lycopersicum] gb\|AAR82926.1\| coronatine-insensitive 1 [Solanum lycopersicum]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	coronatine-insensitive 1	-	-	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	TonB box, conserved site	IPR010916	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ74

Fln msg: Separated hits, possible frame ERROR between 328 and 348, your sequence is shorter than subject: 147 - 603

Fln protein: IGEYSTNVRWMLLGFVGETDQGILEFSKGCPKLERLEIRGCCFSESALAAAVLQLKSLKYIWVQGYNATVTGANLLAMARPYWNIEFSPALQSSDVYAEDVAEGKNRIxxxxxxxxHSLAGRRTDHPESIIPLAPPFRNYHQVAVF*

Protein Length: 148

Fln nts: TATTGGCGAGTACAGCACTAATGTCAGGTGGATGCTTCTAGGTTTTGTTGGTGAAACTGACCAAGGCATTCTCGAGTTTTCCAAGGGCTGCCCAAAGCTGGAAAGGCTAGAAATTAGAGGTTGTTGTTTTAGTGAATCTGCATTGGCAGCTGCAGTGCTTCAGCTGAAATCACTGAAGTACATATGGGTTCAAGGATATAATGCAACTGTTACTGGTGCTAACCTTCTAGCGATGGCTCGACCTTATTGGAACATAGAGTTTTCTCCTGCTTTGCAATCGAGTGATGTGTATGCTGAAGATGTGGCAGAAGGAAAAAACAGGATCAGxxxxxxxxxxxxxxxxxxxxxACATTCTCTTGCTGGAAGGAGGACAGATCACCCAGAGTCCATAATTCCCTTAGCCCCACCTTTCCGGAATTACCATCAAGTAGCTGTCTTCTAATGTGAATATCTATATAAAATATGAGTCCC

Fln Alignment:

Contig2903___IGEYSTNVRWMLLGFVGETDQGILEFSKGCPKLERLEIRGCCFSESALAAAVLQLKSLKYIWVQGYNATVTGANLLAMARPYWNIEFSPALQSS-DVYAEDVAEGKNRIRxxxxxxxHSLAGRRTDHPESIIPLAPPFRNYHQVAVF
B8LQ74_________________IGEYSTNVRWMLLGFAGETDQGILEFSKGCPKLERLEIRGCSFSESALAAAVLRLKSLKYIWVQGYNATVTGANLLAMARPYWNIEFSPGLQSTKDVLVEDMAAEKMQDRxxxxxxxYSLAGNRTDHPESVIPLASPFRNYQQVAVF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain