SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2846

Length: 641 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2846 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11567	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Porphobilinogen deaminase, chloroplastic n=4 Tax=BEP clade RepID=HEM3_ORYSJ	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	porphobilinogen deaminase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydroxymethylbilane synthase.	EC:2.5.1.61	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860	88%
Blast2go	Metabolic pathways	01100	88%
Blast2go	Biosynthesis of secondary metabolites	01110	88%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	88%
Blast2go	chlorophyll biosynthetic process	GO:0015995	Biological Process	88%
Blast2go	peptidyl-pyrromethane cofactor linkage	GO:0018160	Biological Process	88%
Blast2go	hydroxymethylbilane synthase activity	GO:0004418	Molecular Function	88%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	88%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	88%
Blast2go	apoplast	GO:0048046	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tetrapyrrole biosynthesis, hydroxymethylbilane synthase	IPR000860	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	T %	Probability
257		16	83	0.994512
259	16		83	0.994512
403		75	25	0.996473
414	66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain