SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2818

Length: 519 nt

UniGene Fasta

>biog2_v2.0_unigene2818
ATGGGGGGTGTAAAAGCACCACCCCAGTTAGAATAGATAGTCAGGCAAAATATGGTGCAATGGCAAGGGGTGATGGAGCAATATATCTTCGCTTTCCTCGTCCAGGCTATCGTGAAAAGATTTGGGATCATGCAGCTGGTTGCATTGTAATCCAAGAGGCTGGTGGTGTTGTAGTTGATGCTGCTGGAAAGCCTCTTGATTTCTCACGGGGGAGGTATCTCGATGTGGAAAAGGGTATAATTGCAACCAATGCCAAACTGATGCCATTGCTTCTTAGTGCAGTGCAAGCTGCTCTCAAGGAAGAAAAATCTGTGCTAACATGATTGCTAGTTGCTTGGACTGACTGACTCAGTCAGTTGGTCAATTCATCACCGCCTACCTGGGTCCACGCACAGACACATTTCAAATATTGCATATCTTCAACCTCATTAAGACAAATCTTCTTGATATTGCCTTTTCACAGGGACCTAAATTTCCTGGTCTCACCAATGCTGATAATTAATTATACTCTTGATGGAC

Ace file of the UniGene biog2_v2.0_unigene2818

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9522	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	inositol polyphosphate 1-phosphatase [Arabidopsis thaliana] gb\|AED97825.1\| inositol polyphosphate 1-phosphatase [Arabidopsis thaliana]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	3 (2 ) -bisphosphate nucleotidase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	3'(2'),5'-bisphosphate nucleotidase.	EC:3.1.3.7	-	0.0	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sulfur metabolism	00920		0.0	80%
Blast2go	Metabolic pathways	01100		0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	80%
Blast2go	positive regulation of unidimensional cell growth	GO:0051512	Biological Process	80%
Blast2go	regulation of jasmonic acid biosynthetic process	GO:0080141	Biological Process	80%
Blast2go	negative regulation of signal transduction	GO:0009968	Biological Process	80%
Blast2go	miRNA catabolic process	GO:0010587	Biological Process	80%
Blast2go	photoperiodism, flowering	GO:0048573	Biological Process	80%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	80%
Blast2go	phosphatidylinositol-mediated signaling	GO:0048015	Biological Process	80%
Blast2go	sulfur compound metabolic process	GO:0006790	Biological Process	80%
Blast2go	response to cold	GO:0009409	Biological Process	80%
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	80%
Blast2go	response to cation stress	GO:0043157	Biological Process	80%
Blast2go	inositol or phosphatidylinositol phosphatase activity	GO:0004437	Molecular Function	80%
Blast2go	3'(2'),5'-bisphosphate nucleotidase activity	GO:0008441	Molecular Function	80%
Blast2go	nucleotide phosphatase activity	GO:0019204	Molecular Function	80%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Inositol monophosphatase	IPR000760	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	3(2),5 -bisphosphate nucleotidase HAL2	IPR006239	-	-
Sma3	ApaG domain	IPR007474	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT90

Fln msg: your sequence is shorter than subject: 107 - 483

Fln protein: GGCKSTTPVRIDSQAKYGAMARGDGAIYLRFPRPGYREKIWDHAAGCIVIQEAGGVVVDAAGKPLDFSRGRYLDVEKGIIATNAKLMPLLLSAVQAALKEEKSVLT*

Protein Length: 108

Fln nts: ATGGGGGGTGTAAAAGCACCACCCCAGTTAGAATAGATAGTCAGGCAAAATATGGTGCAATGGCAAGGGGTGATGGAGCAATATATCTTCGCTTTCCTCGTCCAGGCTATCGTGAAAAGATTTGGGATCATGCAGCTGGTTGCATTGTAATCCAAGAGGCTGGTGGTGTTGTAGTTGATGCTGCTGGAAAGCCTCTTGATTTCTCACGGGGGAGGTATCTCGATGTGGAAAAGGGTATAATTGCAACCAATGCCAAACTGATGCCATTGCTTCTTAGTGCAGTGCAAGCTGCTCTCAAGGAAGAAAAATCTGTGCTAACATGA___TTGCTAGTTGCTTGGACTGACTGACTCAGTCAGTTGGTCAATTCATCACCGCCTACCTGGGTCCACGCACAGACACATTTCAAATATTGCATATCTTCAACCTCATTAAGACAAATCTTCTTGATATTGCCTTTTCACAGGGACCTAAATTTCCTGGTCTCACCAATGCTGATAATTAATTATACTCTTGATGGAC

Fln Alignment:

Contig2818___STTPVRIDSQAKYGAMARGDGAIYLRFPRPGYREKIWDHAAGCIVIQEAGGVVVDAAGKPLDFSRGRYLD-VEKGIIA-TNAKLMPLLLSAVQAA
C0PT90_________________SNHPLRVYSMAKYAAIARGDAEIFMKFARAGYKEKIWDHAAGVLIIQEAGGVVTDAGGSPLDFSKGIYLEGLDRGIVACSGARLHEKIIAAVDAS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
430			40	60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain