SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2775

Length: 1816 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2775

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2493	39/39

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-CoA synthase n=1 Tax=Sorghum bicolor RepID=C5YW23_SORBI	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	3-ketoacyl- synthase	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid biosynthetic process	GO:0006633	Biological Process	69%
Blast2go	response to cold	GO:0009409	Biological Process	69%
Blast2go	very long-chain fatty acid metabolic process	GO:0000038	Biological Process	69%
Blast2go	cuticle development	GO:0042335	Biological Process	69%
Blast2go	response to light stimulus	GO:0009416	Biological Process	69%
Blast2go		GO:0008415	Molecular Function	69%
Blast2go	membrane	GO:0016020	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Very-long-chain 3-ketoacyl-CoA synthase	IPR012392	-	-
Sma3	FAE1/Type III polyketide synthase-like protein	IPR013601	-	-
Sma3	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal	IPR013747	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-
Sma3	Ribosomal protein S10, conserved site	IPR018268	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7W7

Fln msg: your sequence is longer than subject: 483 - 305

Fln protein: MTTLVSRWSLLGELWMMNFVDALQLSETSMLLRRAAEVTLLCCMVAVALFYIMTRRRRGECYLVDYSCYRPPEDRKMNTEACIYFSVSTEPPVADRMDLQWKVYLRSGLGEETAVARFLFNEDRVATLEEARLEMEESFAAVLNDLFAKSCVEPWEIDILIVNVSTFSPAPSLAAWVVNRYKMKESVKTFNLSGMGCSANVIAVDMAKDLFKIYRDSYALIVGSENTTVNANYGGNDKAMMLTNCLFRVGGNAVLLSNKAKDAARAKMKLLHVVRTNTAADDEAYGCVMSKEDAEGFYGIGLRVSLINVAAEAVKKNMTTLGPKVLPITEQLYYAYNFFCVKVLKRDLKPYIPNFRLAFSHFCIHPGGRAVINGVGKSLQLSDHDLEPSRMALHRFGNTSTSGLWYEVAYLEAKRRFKVGDRVWQIGLGSGFKCNSAVWEVMNETKAMEANVWDDCIHRYPCNTRNRFTDDYCRRLIDTFRK*

Protein Length: 484

Fln nts: ATGGGGGACAATATGTTAATCTAATATATAGAGAACAACAACAGCCAGGATGGGGACAGTGTTAAGTAGACAGAACGGAGAAA_-_ATGACGACTCTCGTGTCGAGATGGTCTCTGCTCGGAGAACTGTGGATGATGAATTTCGTCGATGCGCTCCAGCTTTCGGAAACATCCATGCTTTTGAGGAGGGCGGCTGAGGTTACTCTGCTTTGTTGCATGGTAGCAGTGGCGCTTTTTTATATTATGACTCGGAGGCGGCGAGGGGAGTGTTATCTGGTGGATTACAGTTGTTATAGACCGCCGGAGGACCGAAAGATGAACACCGAGGCGTGCATATATTTCAGCGTCAGCACCGAGCCCCCGGTGGCAGATCGCATGGACTTGCAGTGGAAGGTCTATCTCCGCTCCGGTTTGGGAGAAGAGACGGCCGTCGCTCGCTTTCTCTTCAACGAAGACCGCGTTGCGACGCTGGAGGAGGCGCGGCTGGAGATGGAGGAGAGCTTCGCGGCTGTTCTCAACGATCTGTTCGCCAAGTCGTGCGTGGAGCCGTGGGAGATCGACATTCTCATCGTCAACGTCTCGACTTTCAGCCCGGCGCCGTCGCTGGCAGCGTGGGTCGTGAATCGCTACAAGATGAAAGAGAGCGTGAAGACCTTCAATCTTTCTGGAATGGGCTGCAGCGCCAACGTTATAGCCGTGGACATGGCGAAGGATCTCTTCAAGATCTACCGCGACTCCTATGCTCTCATCGTCGGCAGCGAGAACACGACGGTCAATGCCAATTACGGCGGCAATGACAAGGCCATGATGCTCACGAATTGTCTGTTCAGAGTCGGGGGAAACGCCGTGCTACTGTCGAACAAAGCGAAAGACGCAGCCCGGGCAAAGATGAAGCTCCTGCACGTCGTTAGAACGAATACCGCAGCCGACGACGAGGCCTACGGCTGCGTCATGTCGAAAGAAGACGCCGAGGGTTTCTACGGCATCGGCCTCCGCGTGTCGCTCATCAACGTGGCCGCGGAGGCCGTGAAGAAAAACATGACAACCCTAGGCCCGAAAGTTCTCCCCATAACTGAACAGCTCTATTACGCCTACAATTTCTTCTGCGTCAAAGTTCTCAAAAGGGATTTGAAACCCTACATCCCCAACTTCAGACTCGCGTTCAGCCATTTCTGCATCCATCCCGGCGGGCGAGCAGTTATCAACGGGGTCGGGAAGAGCCTGCAGCTGAGCGATCACGATTTGGAACCGTCTCGCATGGCGCTCCATCGATTCGGGAACACTTCAACCAGCGGGCTCTGGTACGAGGTAGCTTACCTGGAAGCCAAGAGACGCTTCAAGGTGGGAGACCGTGTTTGGCAGATAGGCCTGGGTTCGGGATTCAAGTGCAATAGCGCTGTGTGGGAAGTAATGAATGAAACGAAGGCTATGGAGGCCAATGTGTGGGACGATTGCATTCACAGGTATCCTTGCAATACGCGTAACAGATTCACGGACGACTACTGCCGCCGTTTGATAGATACGTTTCGAAAATAG___GCTCTACGTGCGGCACCCAATCAGTACCTTGCTTTTTAATAATGTTCATATAGAGGTATTCATAGAGTAAATTGCATTTGAGTTTTTGACCAGTGCCTGTGCCATGTATAAGCAACCTGTCTGTCTGCGTTGTACACAGCTATAGACATTACAAATAGAAATGGCTGTAAATTCATAATCCAAGGGGTGGGTATGTGCCAGTGGGTTGAAAGTCTAGTACGCTTACGCGAGGCTTTTTAATTGTTCACTGCTTTTATGATGTAATTTATCCTGGATTGCGTATC

Fln Alignment:

Contig2775___VNRYKMKESVKTFNLSGMGCSANVIAVDMAKDLFKIYRDSYALIVGSENTTVNANYGGNDKAMMLTNCLFRVGGNAVLLSNKAKDAARAKMKLLHVVRTNTAADDEAYGCVMSKEDAEGFYGIGLRVSLINVAAEAVKKNMTTLGPKVLPITEQLYYAYNFFCVKVLKRDLKPYIPNFRLAFSHFCIHPGGRAVINGVGKSLQLSDHDLEPSRMALHRFGNTSTSGLWYEVAYLEAKRRFKVGDRVWQIGLGSGFKCNSAVWEVMNETKAMEANVWDDCIHRYPCNTRNRFTDDYCRRLIDTFRK
D5A7W7_________________MNRYKMKESVKTFNLSGMGCSANVIAVDMAKDLFKIYHDSYALVVGTENTTVNANYGGSDKAMMLTNCLFRVGGNAVLLSNKAKDAARAKMKLLHVVRTNVAADDEAYGCVMSKEDAEGFYGIGLRQSLIEVAGNAVRKNMTTLGSKVLPITELLYYAYNVFCIKALKRNLKPYIPNFRLAFSHFCIHPGGRAVVNGVGKNLRLSDYDLEPSRMALHRFGNTSTSGLWYEVAYLEAKRRFKVGDRVWQIGLGSGFKCNSAVWEVMNETKPREANVWDDCIHRHPCNTRNRFTDDYCRKLIDTFRK

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
81	85		14		0.993533
92		14		85	0.993533
394	50			50	1.0
625	83	16			0.994512
659	16			83	0.994512
661		83	16		0.994512
662			16	83	0.994512
1028	25		75		0.996473
1029	75		25		0.996473
1397	10		90		0.90298
1495	88	11			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain