SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2759

Length: 1378 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2759

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5259	1/42
SustainPine v2.0	sp_v2.0_unigene5441	40/42
SustainPine v2.0	sp_v2.0_unigene77031	1/42

Source	Descriptions	Term	Type	Identity
AutoFact	Rac-like GTP binding protein n=1 Tax=Picea mariana RepID=O65062_PICMA	-	-	88%
FL-Next	tr=Rac-like GTP binding protein; Picea mariana (Black spruce) (Abies mariana).	-	-	94%
Blast2go	rop-family small gtpase	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	96%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	96%
Blast2go	protein transport	GO:0015031	Biological Process	96%
Blast2go	GTPase activity	GO:0003924	Molecular Function	96%
Blast2go	protein kinase binding	GO:0019901	Molecular Function	96%
Blast2go	GTP binding	GO:0005525	Molecular Function	96%
Blast2go	nucleolus	GO:0005730	Cellular Component	96%
Blast2go	spindle	GO:0005819	Cellular Component	96%
Blast2go	cytoplasm	GO:0005737	Cellular Component	96%
Blast2go	site of polarized growth	GO:0030427	Cellular Component	96%
Blast2go	plasma membrane	GO:0005886	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rho type	IPR003578	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: O65062

Fln msg:

Fln protein: MSTCKFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKPSYENITKKWLPELRHFAPGVPIVIVGTKLDLRDDKQFFADHPGAVPITTAQGEELKKQIGASAYIECSSKTQQNIKAVFDSAIRVVLQPPKQKRKKKRKSQKNCSIL*

Protein Length: 200

Fln nts: AGACCATCAATACAACAAATTTTCAGGAAGAATGTGTGTGTACAATCTTGTAAGAGAAGAAACGTTTCCCTGTATGGGGACTGTTGGGGAGGTTACCGGATCGTTTCTGGCGGAAGCAAACGTGGTGGCGGTCATGATTCATTGATTGATCTTAGGGTCATATAAGGGGCCTTGGAAAGGGGCATTTTTGCAGCTCTCGTTAATTAACCCGACGGAGAATGATGAATTGAAGGGCTATCATCTCAAGGCAGAGGGG_-_ATGAGTACCTGTAAATTCATAAAATGTGTGACTGTCGGGGACGGAGCTGTAGGCAAGACCTGTATGCTCATTTCGTATACGAGCAATACTTTTCCAACTGATTATGTACCAACTGTTTTTGATAACTTCAGTGCAAATGTTGTGGTGGATGGCAACACAGTGAACCTTGGCCTGTGGGATACAGCAGGTCAAGAGGACTACAATAGATTAAGACCTCTGAGCTACAGGGGAGCAGATGTTTTTATTCTGGCATTTTCTCTTATTAGCAAGCCAAGCTATGAGAATATTACCAAAAAGTGGCTTCCTGAACTGAGGCATTTTGCACCCGGTGTTCCAATAGTTATCGTTGGAACTAAACTAGATCTTCGGGATGACAAACAGTTTTTTGCTGATCACCCTGGTGCTGTGCCTATAACAACTGCTCAAGGGGAAGAGTTGAAGAAGCAAATTGGTGCTTCTGCATACATAGAGTGCAGTTCAAAAACACAACAGAATATCAAAGCCGTCTTTGATTCAGCCATCAGGGTGGTGCTTCAACCTCCAAAGCAGAAGAGAAAAAAGAAAAGGAAATCTCAGAAGAATTGTTCAATCTTGTGA___TTGGTGAATTATTGGCAAACATGTTGCATATGGAATTTTGAACTTATGCATTACAGAATGGAAAATTATGTGCTGAGATGGCATACTTGAATCTGGTGACTTTATTGATGCGTTGTAGCTCTCTGCAGTAGACCTCAGTATGTATAGTTGTCATGAGAGCTCAATGACAAATATTTAGTGGTCTTGTTGAGTTCCCTGTGGTGGTGTCCCACAGAAGGAACAGAACTGTAATAACAAATTTTTGCATAATATTTAATTATTATATAGAAGCTTATCATTATGCATATAGTAAAGCTACTTTCTGGAATCACATCAGCCACCGGTTTATTTGGTGGTCTATGATCTTCAATTAATTCAATGTCTTTAGTTATTTGTAGGAGAGATTGTAGTGAATAGAGGGTGAAAATAGGAGGGGATCTTCTTCCCGTGGGAATAAACTCGTTACTGTTCAATCATACAAGTTGTATCTATGAAGCTGTGTTTCAAATTCCTGTACAGCATTTTGGAAAGATACACCTCATGTTT

Fln Alignment:

Contig2759___MSTCKFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKPSYENITKKWLPELRHFAPGVPIVIVGTKLDLRDDKQFFADHPGAVPITTAQGEELKKQIGASAYIECSSKTQQNIKAVFDSAIRVVLXXXXXXXXXXXXXXXNCSIL
O65062_________________MSTCKFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIMKKWLLELRHFAPGVPIVLVGTKLDLRDDKQFFTDHPSAVPITTAQGEELKKQIGAAAYIECSSKTQQNIKAVFDSAIRVVLQPPKVKRKKKRKSHKTCSIL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
873	80			20	0.995493
874		80	20		0.995493
875	80		20		0.995493
876			20	80	0.995493
913		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain