SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2713

Length: 451 nt

UniGene Fasta

>biog2_v2.0_unigene2713
ATGGGAAGGAAGGAACATATGAAAATGCAGAAGGTTGTACTCAGCAGACCATCCCTGCAGTTCCCACAGTTGGTGATTCTAGGGATGACTGGAAAATTCTTAGAGCTTTATCTGAAGTTTCTGGAGTAAAACTCCCATATGATACAGTAAATGCACTTCGTACTCGCATTCGAGCTGTGTCCCCAAATTTGTTTCGAGTTGATGAGAGGGAACCTGCATCAGCATGGCTTCGAGAACTGAAGCCTGAATTCAACTCAAAAATGAGTCGAAGACCTTTTACCAATGCTATTGATAACTTCTACATGACTGATTCTATCTGTCGGGCCTCAAAAACAATGGCTCAGTGCACTGCCACATTACTCAGCCAGAAGTAATAAGCACTCCTAAGAACTTGTTTTCCAGAGCCATTAAAAATGTGCAGGATCTGCAATCTGCACACTTTGACTATTTA

Ace file of the UniGene biog2_v2.0_unigene2713

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6370	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	NADH-ubiquinone oxidoreductase 75 kDa subunit n=1 Tax=Picea sitchensis RepID=B8LMM8_PICSI	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	nadh-ubiquinone oxidoreductase subunit	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Oxidative phosphorylation	00190		0.0	84%
Blast2go	Metabolic pathways	01100		0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	84%
Blast2go	transport	GO:0006810	Biological Process	84%
Blast2go	ATP synthesis coupled electron transport	GO:0042773	Biological Process	84%
Blast2go	photorespiration	GO:0009853	Biological Process	84%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	84%
Blast2go	2 iron, 2 sulfur cluster binding	GO:0051537	Molecular Function	84%
Blast2go	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	84%
Blast2go	metal ion binding	GO:0046872	Molecular Function	84%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	84%
Blast2go	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	84%
Blast2go	mitochondrial respiratory chain complex I	GO:0005747	Cellular Component	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	2Fe-2S ferredoxin-type domain	IPR001041	-	-
Sma3	Molybdopterin oxidoreductase	IPR006656	-	-
Sma3	NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site	IPR000283	-	-
Sma3	NADH:ubiquinone oxidoreductase, subunit G	IPR010228	-	-
Sma3	NADH-quinone oxidoreductase, chain G, C-terminal	IPR015405	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMM8

Fln msg: your sequence is shorter than subject: 124 - 750

Fln protein: GKEGTYENAEGCTQQTIPAVPTVGDSRDDWKILRALSEVSGVKLPYDTVNALRTRIRAVSPNLFRVDEREPASAWLRELKPEFNSKMSRRPFTNAIDNFYMTDSICRASKTMAQCTATLLSQK*

Protein Length: 125

Fln nts: ATGGGAAGGAAGGAACATATGAAAATGCAGAAGGTTGTACTCAGCAGACCATCCCTGCAGTTCCCACAGTTGGTGATTCTAGGGATGACTGGAAAATTCTTAGAGCTTTATCTGAAGTTTCTGGAGTAAAACTCCCATATGATACAGTAAATGCACTTCGTACTCGCATTCGAGCTGTGTCCCCAAATTTGTTTCGAGTTGATGAGAGGGAACCTGCATCAGCATGGCTTCGAGAACTGAAGCCTGAATTCAACTCAAAAATGAGTCGAAGACCTTTTACCAATGCTATTGATAACTTCTACATGACTGATTCTATCTGTCGGGCCTCAAAAACAATGGCTCAGTGCACTGCCACATTACTCAGCCAGAAGTAA___TAAGCACTCCTAAGAACTTGTTTTCCAGAGCCATTAAAAATGTGCAGGATCTGCAATCTGCACACTTTGACTATTTA

Fln Alignment:

Contig2713___KEGTYENAEGCTQQTIPAVPTVGDSRDDWKILRALSEVSGVKLPYDTVNALRTRIRAVSPNLFRVDEREPASAWLRELKPEFNSKMSRRPFTNAIDNFYMTDSICRASKTMAQCTATLLSQK
B8LMM8_________________KEGTYENTEGCTQQTIPAVPTVGDSRDDWKILRALSEISGVKLPYDTVNALRTRIRAVSPNLFRVDEREPASAWIRELKPEFNSKMSPRPFNKAIDNFYMTDSICRASKTMAQCTAALLSEK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
96	80			20	0.995493
97	80		20		0.995493
98			20	80	0.995493
99			20	80	0.995493
134		20		80	0.995493
262	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain