SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2641

Length: 1273 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2641

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15482	29/32
SustainPine v2.0	sp_v2.0_unigene17097	1/32
SustainPine v2.0	sp_v2.0_unigene63609	1/32
SustainPine v2.0	sp_v2.0_unigene81620	1/32

Source	Descriptions	Term	Type	Identity
AutoFact	Thioredoxin peroxidase n=1 Tax=Elaeis guineensis RepID=B3TLV1_ELAGV	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	2-cys peroxiredoxin	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxiredoxin.	EC:1.11.1.15	-	0.0	90%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glutathione metabolism	00480		0.0	90%
Blast2go	Metabolic pathways	01100		0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	90%
Blast2go	response to cold	GO:0009409	Biological Process	90%
Blast2go	peroxiredoxin activity	GO:0051920	Molecular Function	90%
Blast2go	stromule	GO:0010319	Cellular Component	90%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	90%
Blast2go	apoplast	GO:0048046	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	-
Sma3		IPR017936	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRA2

Fln msg: Overlapping hits, possible frame ERROR between 449 and 413,

Fln protein: MASARSLSSPLLLSSTHERVRAGSSSSGRWRAPMGGLEGLWRVPKGAFEGLGKTFSTRLAGPRTAPACTSNIKSSNLGRRLVVNAGELPLVGNKAPDFEAEAVFDQEFIKVKLSEYIxxxxxxxxxxxxxxTFVCPTEITAFSDRYSEFEKLNTEILGVSIDSVFSHLAWVQTERKAGGLGDLKYPLISDVTKGISKAYNVLIADQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQDNPDEVCPAGWKPGDKSMKPDPKLSKEYFEAI*

Protein Length: 284

Fln nts: ATGGGGGCGCACATCTTCAGGGTTTTGTTCTTCCGTTCCAGTTTTGTGGAGTGGCATCC_-_ATGGCGTCTGCAAGATCTTTATCTTCCCCGCTACTGCTATCTTCTACTCACGAGAGAGTCAGGGCAGGTTCTTCATCGTCAGGCAGGTGGAGGGCACCGATGGGGGGTTTAGAAGGCCTGTGGAGAGTACCCAAGGGGGCGTTTGAAGGCCTTGGGAAGACCTTCAGCACACGATTGGCAGGCCCTCGGACCGCTCCCGCGTGCACCTCTAACATTAAAAGCAGCAACCTAGGGAGGAGGCTGGTCGTCAATGCTGGTGAACTTCCATTGGTTGGAAACAAGGCTCCTGATTTTGAAGCAGAGGCTGTTTTTGATCAAGAGTTCATCAAGGTCAAGCTGTCTGAATACATTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACTTTTGTCTGCCCCACAGAAATCACTGCTTTCAGTGACAGATATTCTGAGTTTGAGAAGTTGAACACTGAAATTCTTGGTGTTTCTATTGATAGTGTGTTTTCTCACCTTGCTTGGGTTCAAACTGAAAGGAAAGCTGGCGGTCTTGGTGATTTGAAATATCCTCTGATATCTGATGTTACGAAGGGTATTTCAAAAGCCTACAATGTTTTGATTGCAGATCAGGGAATAGCATTACGCGGACTCTTTATTATTGACAAGGAGGGTGTGATTCAACACTCCACAATCAACAATCTAGCCATTGGTCGTAGTGTGGATGAAACGTTGCGTACATTACAAGCACTTCAATATGTTCAGGATAACCCCGATGAAGTTTGCCCAGCTGGGTGGAAGCCAGGAGACAAATCAATGAAGCCAGATCCCAAATTGAGTAAAGAATACTTTGAAGCTATCTGA___AAATCAAGATGAAAATTAAATATAGCGTTGGTCCATAGCGCTGCATTGTGGTCCAAGTGAAGGTTTACTGGGGATATCAAAGAATAAGGCATTCAATTTTGATTATTTTCTTGATATGTAGTTATTTTGATGTCGCCTACATTGAAGGCATGACTGCGAAGATCAACGTTTTTCAGTACGTGTTTAAGAAATCCTTTGCTATTTTTTTATCCAGCTCATATGATTCAACAATTGCTTGGAATTCTTTCCGTTCCAAGTGTTTGATTCGTATAGCGTGTAAAGATGTATGGTAGAAGATTCAAGAATAAGGGCAGCGGCGGTCTTATAATAATATATTTAATTTTATCATGTGCAAATTTCCATTCT

Fln Alignment:

Contig2641___THEXXXXXXXXXXXXXXPMGGLEGLWRVPKGAFEGLGKTFSTRLAGPRTAPACTSNIKSSNLGRRLVVNAGELPLVGNKAPDFEAEAVFDQEFIKVKLSEYIGxxxxxxxxxxxxxxFVCPTEITAFSDRYSEFEKLNTEILGVSIDSVFSHLAWVQTERKAGGLGDLKYPLISDVTKGISKAYNVLIADQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQDNPDEVCPAGWKPGDKSMKPDPKLSKEYFEAI
A9NRA2_________________THERVKAGCSSSGRWRAPKGALEGLRRVPKGGFEGLGKAFSNRLAGPRTAAACTSNSKSSNLGRRLVVNAGELPLVGNKAPDFEAEAVFDQEFIKVKLSEYIGxxxxxxxxxxxxxxFVCPTEITAFSDRHSEFEKLNTEILGVSIDSVFSHLAWVQTDRKAGGLGDLKYPLISDVTKGISKAYNVLIADQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQDNPDEVCPAGWKPGDKSMKPDPKLSKEYFEAI

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
24	25			75	0.996473
26			25	75	0.996473
28			25	75	0.996473
29			25	75	0.996473
71	75		25		0.996473
114	25		75		0.996473
140		25		75	0.996473
208	80		20		0.995493
563	25			75	0.996473
886	85		14		0.993533
1028		14		85	0.993533
1050	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain