SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2456

Length: 1442 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2456

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17061	21/21

Source	Descriptions	Term	Type	Identity
AutoFact	Sodium bile acid symporter-like protein [Arabidopsis thaliana] gb\|ABG25066.1\| At2g26900 [Arabidopsis thaliana] gb\|AEC07905.1\| Sodium bile acid symporter-like protein [Arabidopsis thaliana]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	bile acid na+ symporter family protein	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bile acid transporter	IPR004710	-	0.0	-
Sma3	Bile acid:sodium symporter	IPR002657	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUU8

Fln msg: your sequence is shorter than subject: 349 - 423

Fln protein: ASDNGRRQMLCKAEENAVGDVPSAVSSEMSPFERVVELLTTLFPVWVVIGASIGIYKPSAVTWLQTDLFTVCLGFLMLSMGLTLTFDDFRRCLRNPWTVGVGFLAQYLVKPLLGFVIALSLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLLPTIIGVLSHEYFPKFTNKIITFTPLVGVILTTLLCASPIGQVSGVLQSQGAGLIIPVAILHAAAFALGYWVSKWSSFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVFMALGGSALAVYWRNMPIPFDDKDDFKE*

Protein Length: 350

Fln nts: GCCTCGGATAATGGAAGGAGGCAAATGTTGTGCAAAGCGGAAGAAAATGCTGTTGGGGATGTTCCTAGTGCAGTTTCCAGTGAGATGAGTCCATTTGAGAGGGTAGTAGAGTTGTTGACAACTCTCTTTCCTGTTTGGGTGGTAATTGGAGCATCTATTGGCATATACAAACCCTCAGCGGTTACATGGTTGCAAACAGATTTGTTCACTGTGTGTCTAGGGTTTCTCATGTTGTCTATGGGCTTGACACTGACATTCGATGATTTCAGGAGATGCTTACGGAATCCATGGACAGTGGGTGTGGGGTTTTTAGCACAATACCTTGTCAAACCACTTCTAGGATTCGTAATTGCTTTGAGCTTAAAACTTTCTGCTCCTCTTGCAACTGGCCTTATTTTAGTTTCCTGCTGCCCTGGTGGTCAAGCATCAAATGTTGCAACTTACATATCTAAGGGAAATGTGGCACTTTCTGTCCTCATGACAACTTGTTCAACTATTGGTGCTATTATTATGACTCCACTTCTTACCAAGCTTCTTGCGGGCCAGTTAGTCCCAGTTGATGCAGCGGGTCTGGCTCTGAGCACATTTCAAGTTGTATTGCTGCCCACTATAATTGGAGTACTATCGCATGAGTATTTTCCAAAATTCACAAACAAAATTATAACCTTCACACCATTGGTTGGTGTCATTCTCACAACTCTGCTCTGTGCTAGCCCTATTGGTCAGGTGTCAGGAGTTTTACAGTCTCAAGGAGCAGGGCTCATAATACCGGTTGCAATTTTACATGCAGCTGCATTTGCCCTTGGCTATTGGGTTTCTAAATGGTCATCATTTGGTGAATCTACTTCTCGCACAATATCAATAGAATGTGGCATGCAGAGCTCAGCGCTTGGATTCCTGCTAGCACAGAAACACTTCACAAATCCACTGGTTGCTGTTCCTTCGGCTGTCAGCGTTGTCTTCATGGCGCTGGGAGGAAGCGCGCTGGCTGTTTACTGGAGGAATATGCCAATTCCCTTTGACGATAAGGATGATTTCAAGGAGTAA___TTGCAGTTGCTTGTTAATATTTTTGACATACAAATAATTGAGGAGAAACTTGTCTAGTAGCCATCTTGCTACAGATATAGGTCTGGAGGAATGGACCATATTAGAGGATCTTCTTGGTTTTCTTTCCTCTTCTATCTTAGCTCACAAACAGGTGTTTCAAGTGAAAACTGAAAGTTGATAAATAACACTGGATTGTTGCAATCAAGTCCATTAGCTGTTGGTCTTTATTCTTTTAGTAGCTTATTCAAAGCATGTATAATGTGGATCATCAATGAATATTAGTTGGATCATTAGAGGATTTCAGCGTTTTAATGGACTGCTCATGTTGTGAGCACGTTATTTGTGTTTTAAATATGTTTCTTAATCTAACGGCCTaTATGAGGAGAATCTTTTAG

Fln Alignment:

Contig2456___SDNGRRQMLCKAEENAVGDVPSAVSSEMSPFERVVELLTTLFPVWVVIGASIGIYKPSAVTWLQTDLFTVCLGFLMLSMGLTLTFDDFRRCLRNPWTVGVGFLAQYLVKPLLGFVIALSLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLLPTIIGVLSHEYFPKFTNKIITFTPLVGVILTTLLCASPIGQVSGVLQSQGAGLIIPVAILHAAAFALGYWVSKWSSFGESTSRTISIECGMQSSALGFLLAQKHFTNXXXXXXXXXXXXFMALGGSALAVYWRNMPIPFDDKDDFKE
A9NUU8_________________SDNGRMQMLCKAEANAVGDVPGSASSEMSPFERVVELLTTLFPVWVVIGAAIGIYKPSVVTWLQTDLFTLGLGFLMLSMGLTLKFDDFKRCLRNPWTVGVGFLAQYLIKPLLGFAIALSLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLAVSTFQVVLMPTIIGVLLHEYFPKFTEKIITFTPLIGVILTTLLCASPIGQVSGVLKSQGAGLVLPVAILHAVAFSLGYWVSKWSSFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVFMALGGSVLAVYWRNVPIPFDDKDDFKE

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
579		25		75	0.996473
1015		75		25	0.996473
1041	20			80	0.995493
1043		80	20		0.995493
1044	80		20		0.995493
1045	80		20		0.995493
1170		33		66	0.997452
1264	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain