SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2451

Length: 1420 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2451

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5340	26/26

Source	Descriptions	Term	Type	Identity
AutoFact	DUF1423 multi-domain protein	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	potyvirus vpg interacting protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	primary root development	GO:0080022	Biological Process	77%
Blast2go	regulation of gene expression	GO:0010468	Biological Process	77%
Blast2go	spread of virus in host, cell to cell	GO:0046740	Biological Process	77%
Blast2go	maintenance of shoot apical meristem identity	GO:0010492	Biological Process	77%
Blast2go	root meristem specification	GO:0010071	Biological Process	77%
Blast2go	maintenance of root meristem identity	GO:0010078	Biological Process	77%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	77%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	77%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	77%
Blast2go	nucleus	GO:0005634	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1423, plant	IPR004082	-	0.0	-
Sma3	Zinc finger, PHD-type	IPR001965	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV71

Fln msg: Overlapping hits, possible frame ERROR between 114 and 93, and overlapping frame ERROR between 1175 and 1130, your sequence is shorter than subject: 431 - 623

Fln protein: FVKRLVQSRSDLTPESMSRAHRVQLEVFVAxxxxxxxxxHPDISVTQTVLIEIFSHKRCRNIACQSQLPADDCSCEICSTKSGFCSLCMCVICSKFDFEVNTCRWVGCDTCSHWTHTDCAIRAGQISMGTSLKGGTGSSEMLFRCRACKRTSELLGWVKDVFQHCAPDWDREALMKEFDCVRRIFHGSEDARGRKLFWKSEELLESLKTGAADEARVCKVMQCFFQELETEVAKNVEGEERRVVAPQEACNRIADVVQEVVRKMEAVAEEKARVFKKARLTLDMCDRELEDKSRELAELQFERQRKKQQIEELEAIVRLKQAEADMFQLKADEARREADRLQRIALAKSEKAEEEYASRYLKLRLNEAEAERRYLxxxxxxxxxxxxxxxxxxMLMLCKIQDLLKTVYNVPKTEPQSQTDHSGSIAYSKE*

Protein Length: 432

Fln nts: TTTGTCAAAAGACTTGTACAAAGCAGGAGTGATCTTACACCCGAGTCAATGTCTAGGGCACACAGAGTTCAGTTAGAAGTATTTGTTGCTxxxxxxxxxxxxxxxxxxxxxxxxxxxCATCCAGATATCAGTGTCACTCAAACGGTCCTCATTGAGATATTTTCCCACAAACGATGTAGAAATATAGCATGTCAGAGTCAACTTCCTGCGGATGACTGTAGCTGTGAAATTTGTAGCACCAAGAGTGGATTCTGTAGCCTTTGCATGTGTGTTATTTGCAGCAAATTTGACTTTGAAGTGAATACCTGCCGATGGGTGGGCTGTGATACTTGTTCCCACTGGACACACACAGATTGTGCAATCCGTGCTGGACAAATAAGCATGGGTACCAGTCTTAAGGGTGGTACAGGGTCATCTGAGATGCTTTTCAGATGTAGGGCTTGTAAGAGGACATCGGAACTTTTAGGGTGGGTGAAAGATGTGTTTCAGCACTGTGCCCCTGATTGGGACAGAGAAGCCCTCATGAAGGAATTTGATTGTGTTCGGAGGATATTCCATGGAAGTGAGGATGCTAGGGGCAGAAAACTATTTTGGAAGTCTGAAGAATTATTGGAAAGTCTGAAGACTGGAGCTGCTGATGAGGCCAGAGTTTGCAAAGTGATGCAATGTTTCTTTCAAGAGTTAGAGACAGAGGTGGCTAAAAATGTCGAGGGGGAAGAGAGAAGGGTGGTAGCACCTCAAGAAGCTTGCAATCGTATTGCAGATGTGGTGCAGGAAGTTGTAAGGAAGATGGAAGCTGTTGCAGAGGAGAAAGCTCGTGTTTTCAAAAAGGCACGTCTTACATTAGATATGTGTGATAGGGAACTTGAAGACAAAAGCAGAGAGCTTGCAGAGTTGCAATTTGAGAGGCAACGTAAGAAGCAACAGATAGAGGAACTGGAGGCTATTGTTCGATTAAAACAGGCTGAGGCAGATATGTTCCAACTCAAGGCTGATGAAGCTAGACGAGAGGCAGACAGGCTGCAGCGCATTGCGCTTGCAAAATCAGAAAAAGCAGAGGAGGAATATGCTAGCAGATACCTGAAATTACGATTAAATGAGGCTGAAGCAGAGAGAAGATATCTATTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAATGCTCATGCTGTGCAAAATACAAGATTTGCTCAAAACTGTATACAATGTTCCCAAGACGGAACCACAGAGTCAAACAGATCATTCTGGATCCATTGCTTATAGCAAGGAGTGATCTCTGGTGAAATGTTTATTTGAAAGGACATTTTAGTGGGATTTTGATAAGCGGGATCTCTGTAAAGTCCCTTTTCAGAGTTGCCCAGTTTTTTGAATGGAAGTTGGAACAGTATGTATCTTACACACG

Fln Alignment:

Contig2451___VKRLVQSRSDLTPESMSRAHRVQLEVFVAIxxxxxxxLHPDISVTQTVLIEIFSHKRCRNIACQSQLPADDCSCEICSTKSGFCSLCMCVICSKFDFEVNTCRWVGCDTCSHWTHTDCAIRAGQISMGTSLKGGTGSSEMLFRCRACKRTSELLGWVKDVFQHCAPDWDREALMKEFDCVRRIFHGSEDARGRKLFWKSEELLESLKTGAADEARVCKVMQCFFQELETEVAKNVEGEERRVVAPQEACNRIADVVQEVVRKMEAVAEEKARVFKKARLTLDMCDRELEDKSRELAELQFERQRKKQQIEELEAIVRLKQAEADMFQLKADEARREADRLQRIXXXXXXXXXXXXXXRYLKLRLNEAEAERRYLFEKFNxxxxxxxxxxxxDPSQMLMLCKIQDLLKTVYNVPKTEPQSQTDHSGSIAYSKE
A9NV71_________________LQKLVQGRSDLTPESMSRAHRVQLEVFVSIxxxxxxxLHPDISVTQTVLIEVFAHKRCRNIACQSQLPADDCSCEVCSTKSGFCSLCMCVICSKFDFEVNTCRWVGCDTCSHWTHTDCAIRAGQISMGTSLKGVAGSSEMLFRCRACKRTSELLGWVKDVFQHCALDWDREALMKEFDCVRRVFHGSEDSKGRKLFWKSEELLESLKNGVADEAAVCKVMQRFFQELETEVVKNVEAEERRMIAPQEACNRIADVVQEVVRKMEAVAEEKARVFKKARLTLDMCDRELEDKSRELAELQFERQRKKQQIEELEAIVRLKQAEADMFQLKADEARREADRLQRIALAKSEKAEEEYASRYLKLRLNEAEAERRYLFEKI-xxxxxxxxxxxxDPSQMLMLCKIQDLLKTVYNVPKTEPQSQTDLSGPITYSKE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1118	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain