SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2449

Length: 1944 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene2449
ATGGGGATGGAAGGCTGTTCGGAAGCAGTATATCTTACTTTCTCTTGCTCTAATCACAGGGGCCCTTTTTGTTGGTTTGTTTTCATCTCGTTGCTAGCCAGCTAGGGTTTGCAGCCGAGCACAACAGGGCAATACATCCAAATACTACATCGCTCACAGCTGCAACAAAACCATGATACGATCCGGCGCCTCGCGTCTTCGCAGTAATCTGAAAGGCGGGAGTCTCGGCAGAAAGGCTTTTGCCACGAACACACCGGGGCTTTCTCGAAAAGAAATTGCACAGTCCTCCTCTGGCGGACTGTTCTCATGGCTCACAGGAAACAACTCTAAATCTCTCCCTCCCCTGGATTTTCCCCTGCCAGGCGTGAATCTTCCGCCTACACTTCCAGATCATGTGGAACCAACAAAGACCATTGTCACGACCCTTCCAAATGGTCTCAAAGTTGCATCCGAAAACTCTTCGAGCCCCACTGCATCAATTGGATTGTACGTTGATTGTGGTTCCGTGTATGAGACCCCGTTGTCCAGCGGGGCAACTCACCTCCTGGAACGAATGGCGTTCAAAACCACAAAGAACCGAAGCCATCTTCGGATGGTGCGCGAGGTGGAAGCCATCGGAGGGAATGTTACGGCATCGGCATCCCGAGAACAGATGGGGTACACTTTCGATGCTCTCAAAACCTATCTCCCCGAGATGGTAGAATTGCTGATTGATAGTGTGAGGAACGCAGTTTTTCTTGACTGGGAGGTTAACGAACAGCTAGTGAAAGTGAAATCAGAGATTGCAGAAATTTCGAACAATCCCCAAAGTTTGATTCTGGAGGCACTGCATTCAGCTGGCTATGCTGGTGCATTAGGGAACCCTCTCATGGCTCCTGAATCTGCTATAAACAGATTGAATGGCACAATTTTGGAGGAGTTTGTCACAGAAAACTATACTGCTCCACGCATGGTGTTGGCAGCATCTGGAGTGGATCATCAACAACTGCTCTCGTTTGCTGAGCCTTTGTTGGCTGACCTACCTCAGGTCCCTTGCCAGGAGGTGATTAAATCTCAGTACATCGGTGGTGATTTTCGGTGCCAAGCAGATTCACAGAGGACTCATATTGCTCTAGCATTTGAGGTTCCTGGCGGCTGGCATAGTGAAAAAGATGCAATTGCTTTGACAGTTCTGCAGACGCTCATGGGAGGGGGTGGCTCGTTCTCTGCTGGTGGCCCTGGTAAAGGAATGTATTCTCGATTATATCTTCGAGTTTTGAATGAATACCAACAAGTGCAATCATTTTCTGCTTTCAACAGCATGTACAATGATAGTGGCATTTTTGGTATCCATGCAACAACGGGATCAGACTTTGTATCACAGGCTGTGGAGTTGGCCACCAGAGAGCTCTTAGCTGTTGCAACTCCTGGACAAGTCACTGAGGTGGAGCTGAATCGTGCCAAAAATTCTACAAAGTCCGCTGTTTTGATGAATTTGGAATCAAGGATGGTTGTGACAGAGGATATAGGGAGACAAATCTTGACATATGGGCAGAGGAAACCAGTTGAGCATTTCTTGAAGGTTCTCAATGAAGTGACCTTGAATGATATTACAAATATTGCACAGAAAATAATTTCGACACCATTAACCATGGCCTCGTGGGGAGATGTTATCCAGGTCCCAAGTTATGATGGTGTCAGCAGACTGTTTCATTCAAAGTGATGCATAATGACATTCAGAGCATCATTATTTAAATTTTTGATACATTTTTCGGTTACACACATTCAAGAATTGATCGTGAGCAGGTTTGCATGATGAACTTTAGATGCCCTGCATTGTCATCATTCATTTGCCCTTCCTGTAAAATGTGGTTCTGATCGTTAATGATTTGTATTCGGCTCAATATTTCATCTTGAAGCCCATGGTTGTGGCAAATGAAAAATAAGCTGGTTCTGAGAGGTGGG

Ace file of the UniGene biog2_v2.0_unigene2449 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15351	26/28

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Mitochondrial-processing peptidase subunit alpha; AltName: Full=Alpha-MPP; AltName: Full=Ubiquinol-cytochrome-c reductase subunit II; Flags: Precursor emb\|CAA46990.1\| mitochondrial processing peptidase [Solanum tuberosum]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	mitochondrial-processing peptidase subunit alpha	-	-	84%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L22/L17	IPR001063	-	-
Sma3	Peptidase M16, zinc-binding site	IPR001431	-	-
Sma3	Ribosomal protein L22, bacterial-type	IPR005727	-	-
Sma3	Peptidase M16, C-terminal	IPR007863	-	-
Sma3	Peptidase M16, core	IPR011237	-	-
Sma3	Peptidase M16, N-terminal	IPR011765	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACF4

Fln msg:

Fln protein: MIRSGASRLRSNLKGGSLGRKAFATNTPGLSRKEIAQSSSGGLFSWLTGNNSKSLPPLDFPLPGVNLPPTLPDHVEPTKTIVTTLPNGLKVASENSSSPTASIGLYVDCGSVYETPLSSGATHLLERMAFKTTKNRSHLRMVREVEAIGGNVTASASREQMGYTFDALKTYLPEMVELLIDSVRNAVFLDWEVNEQLVKVKSEIAEISNNPQSLILEALHSAGYAGALGNPLMAPESAINRLNGTILEEFVTENYTAPRMVLAASGVDHQQLLSFAEPLLADLPQVPCQEVIKSQYIGGDFRCQADSQRTHIALAFEVPGGWHSEKDAIALTVLQTLMGGGGSFSAGGPGKGMYSRLYLRVLNEYQQVQSFSAFNSMYNDSGIFGIHATTGSDFVSQAVELATRELLAVATPGQVTEVELNRAKNSTKSAVLMNLESRMVVTEDIGRQILTYGQRKPVEHFLKVLNEVTLNDITNIAQKIISTPLTMASWGDVIQVPSYDGVSRLFHSK*

Protein Length: 511

Fln nts: ATGGGGATGGAAGGCTGTTCGGAAGCAGTATATCTTACTTTCTCTTGCTCTAATCACAGGGGCCCTTTTTGTTGGTTTGTTTTCATCTCGTTGCTAGCCAGCTAGGGTTTGCAGCCGAGCACAACAGGGCAATACATCCAAATACTACATCGCTCACAGCTGCAACAAAACC_-_ATGATACGATCCGGCGCCTCGCGTCTTCGCAGTAATCTGAAAGGCGGGAGTCTCGGCAGAAAGGCTTTTGCCACGAACACACCGGGGCTTTCTCGAAAAGAAATTGCACAGTCCTCCTCTGGCGGACTGTTCTCATGGCTCACAGGAAACAACTCTAAATCTCTCCCTCCCCTGGATTTTCCCCTGCCAGGCGTGAATCTTCCGCCTACACTTCCAGATCATGTGGAACCAACAAAGACCATTGTCACGACCCTTCCAAATGGTCTCAAAGTTGCATCCGAAAACTCTTCGAGCCCCACTGCATCAATTGGATTGTACGTTGATTGTGGTTCCGTGTATGAGACCCCGTTGTCCAGCGGGGCAACTCACCTCCTGGAACGAATGGCGTTCAAAACCACAAAGAACCGAAGCCATCTTCGGATGGTGCGCGAGGTGGAAGCCATCGGAGGGAATGTTACGGCATCGGCATCCCGAGAACAGATGGGGTACACTTTCGATGCTCTCAAAACCTATCTCCCCGAGATGGTAGAATTGCTGATTGATAGTGTGAGGAACGCAGTTTTTCTTGACTGGGAGGTTAACGAACAGCTAGTGAAAGTGAAATCAGAGATTGCAGAAATTTCGAACAATCCCCAAAGTTTGATTCTGGAGGCACTGCATTCAGCTGGCTATGCTGGTGCATTAGGGAACCCTCTCATGGCTCCTGAATCTGCTATAAACAGATTGAATGGCACAATTTTGGAGGAGTTTGTCACAGAAAACTATACTGCTCCACGCATGGTGTTGGCAGCATCTGGAGTGGATCATCAACAACTGCTCTCGTTTGCTGAGCCTTTGTTGGCTGACCTACCTCAGGTCCCTTGCCAGGAGGTGATTAAATCTCAGTACATCGGTGGTGATTTTCGGTGCCAAGCAGATTCACAGAGGACTCATATTGCTCTAGCATTTGAGGTTCCTGGCGGCTGGCATAGTGAAAAAGATGCAATTGCTTTGACAGTTCTGCAGACGCTCATGGGAGGGGGTGGCTCGTTCTCTGCTGGTGGCCCTGGTAAAGGAATGTATTCTCGATTATATCTTCGAGTTTTGAATGAATACCAACAAGTGCAATCATTTTCTGCTTTCAACAGCATGTACAATGATAGTGGCATTTTTGGTATCCATGCAACAACGGGATCAGACTTTGTATCACAGGCTGTGGAGTTGGCCACCAGAGAGCTCTTAGCTGTTGCAACTCCTGGACAAGTCACTGAGGTGGAGCTGAATCGTGCCAAAAATTCTACAAAGTCCGCTGTTTTGATGAATTTGGAATCAAGGATGGTTGTGACAGAGGATATAGGGAGACAAATCTTGACATATGGGCAGAGGAAACCAGTTGAGCATTTCTTGAAGGTTCTCAATGAAGTGACCTTGAATGATATTACAAATATTGCACAGAAAATAATTTCGACACCATTAACCATGGCCTCGTGGGGAGATGTTATCCAGGTCCCAAGTTATGATGGTGTCAGCAGACTGTTTCATTCAAAGTGA___TGCATAATGACATTCAGAGCATCATTATTTAAATTTTTGATACATTTTTCGGTTACACACATTCAAGAATTGATCGTGAGCAGGTTTGCATGATGAACTTTAGATGCCCTGCATTGTCATCATTCATTTGCCCTTCCTGTAAAATGTGGTTCTGATCGTTAATGATTTGTATTCGGCTCAATATTTCATCTTGAAGCCCATGGTTGTGGCAAATGAAAAATAAGCTGGTTCTGAGAGGTGGG

Fln Alignment:

Contig2449___MIRSGASRLRSNLKGGSLGRKAFATNTPGLSRKEIAQ-SSSGGLFSWLTGNNSKSLPPLDFPLPGVNLPPTLPDHVEPTKTIVTTLPNGLKVASENSSSPTASIGLYVDCGSVYETPLSSGATHLLERMAFKTTKNRSHLRMVREVEAIGGNVTASASREQMGYTFDALKTYLPEMVELLIDSVRNAVFLDWEVNEQLVKVKSEIAEISNNPQSLILEALHSAGYAGALGNPLMAPESAINRLNGTILEEFVTENYTAPRMVLAASGVDHQQLLSFAEPLLADLPQVPCQEVIKSQYIGGDFRCQADSQRTHIALAFEVPGGWHSEKDAIALTVLQTLMXXXXXXXXXXXXXGMYSRLYLRVLNEYQQVQSFSAFNSMYNDSGIFGIHATTGSDFVSQAVELATRELLAVATPGQVTEVELNRAKNSTKSAVLMNLESRMVVTEDIGRQILTYGQRKPVEHFLKVLNEVTLNDITNIAQKIISTPLTMASWGDVIQVPSYDGVSRLFHSK
D5ACF4_________________MLRSGASRVRNNLKIGIHGRQAFATSTPGVSRTEIAQQSSSGGLFSWITGNKSKSLPSLDFPLPGVNLPPTLPDYVEPTKTIVTTLPNGLKVASEDSSSPTASIGLYVDCGSVYETPLSSGATHLLERMAFKTTRNRSHLRMVREVEAIGGNVTASASREQMGYTFDALKTYLPEMVELLVDSVRNPVFLDWEVKEQLAKVKSEIAEISSNPQSLILEALHSAGYSGALGNPLMAPESAISRLNGTILEEFVTENYTAPRMVLAASGVNHEQLLSFAEPLLADLPQVPRQEVIKSQYIGGDFRCQADSQRTHVALAFEVPGGWHSEKDAIALTVLQTLMGGGGSFSAGGPGKGMYSRLYLRVLNEYQQVQSFSAFNSMYNDSGIFGIHATTGSDFVSQAVELATRELLAVATPGQVTEVELNRAKNSTKSAVLMNLESRMVVTEDIGRQILTYGQRKPVEHFLKVLNEVTLDDIASIAQKIISTPLTMASWGDVIQVPSYDGVSRLFHSK

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1463	66		33		0.997452
1555	66		33		0.997452
1696	16		83		0.994512
1763		16	83		0.994512
1766	16		83		0.994512
1792		14		85	0.993533
1807	85		14		0.993533
1826	14			85	0.993533
1852		16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain