SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2369

Length: 911 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2369 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15528	20/20

Source	Descriptions	Term	Type	Identity
AutoFact	cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana] sp\|O23193.2\|CBSX1_ARATH RecName: Full=CBS domain-containing protein CBSX1, chloroplastic; AltName: Full=CBS domain-containing protein 2; Short=AtCDCP2; AltName: Full=Protein LOSS	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	cbs domain-containing protein chloroplastic-like	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB13

Fln msg:

Fln protein: MGDLEIGFFIPFGVHSSMGVYSVAAEMASVATYSTGYCYYCCSIPPNSNSISMTRFPVQLNRGTVAKLSKHQHHLSRGFAKGFRGLHINTTRLHLPKSTLMATDVPRKQEVFTVGDFMTRKEYLFVVKPTTMVDEALETLVANRITGLPVVDDDWKLVGVVSDYDLLALDSISGAGRTETGFFPQVGSTWKAFNELQKLLNKTNGKIVAEVMTPSPLVVRESTNLEDAARLLLETKYRRLPVVDNSGKLVGLLTRGNVIKAALEMKHAV*

Protein Length: 271

Fln nts: _-_ATGGGGGATCTGGAGATTGGTTTCTTTATTCCATTTGGTGTCCATAGTTCCATGGGGGTTTATTCAGTTGCAGCAGAAATGGCTTCTGTTGCTACTTATTCAACTGGCTATTGCTATTACTGCTGCTCCATTCCCCCTAATTCCAATTCAATTTCCATGACGAGGTTCCCAGTGCAGTTGAATAGAGGAACCGTGGCTAAGTTAAGCAAACACCAACACCATCTTAGCAGGGGATTTGCAAAGGGATTCAGAGGTCTCCACATCAATACCACAAGACTTCACCTTCCCAAGAGCACTTTAATGGCGACCGACGTGCCGCGTAAGCAAGAAGTTTTTACAGTAGGTGATTTCATGACCAGGAAAGAGTACCTGTTTGTGGTGAAGCCAACAACTATGGTTGATGAGGCCTTGGAAACTCTAGTGGCAAACCGGATCACTGGCTTACCAGTGGTTGATGATGATTGGAAACTAGTTGGAGTTGTTTCTGATTATGACTTGTTAGCACTGGACTCTATATCAGGTGCTGGGCGAACTGAAACAGGTTTTTTCCCACAAGTTGGAAGCACATGGAAAGCTTTCAATGAATTACAGAAACTGCTAAACAAAACTAATGGGAAGATTGTTGCTGAGGTGATGACACCTTCACCACTTGTTGTTCGTGAATCCACCAACCTTGAGGATGCAGCTAGATTATTGCTAGAAACCAAATACCGGAGATTGCCTGTAGTGGACAATAGTGGGAAACTGGTTGGATTACTTACAAGGGGGAATGTGATTAAAGCTGCACTGGAAATGAAACACGCTGTTTAG___CATGAGGCTACAGGGATTTGATTATATGGAGATCTTAAAACATGGATTTAGAATAAGGGTCTATAAAAGGTAAGTTGCGAAAATGGGCTATATAAGTCATT

Fln Alignment:

Contig2369___MGVYSVAAEMASVATYSTGXXXXXCSIPPNSNSISMTRFPVQLNRGTVAKLSKHQHHLSRGFAKGFRGLHINTTRLHLPKSTLMATDVPRKQEVFTVGDFMTRKEYLFVVKPTTMVDEALETLVANRITGLPVVDDDWKLVGVVSDYDLLALDSISGAGRTETGFFPQVGSTWKAFNELQKLLNKTNGKIVAEVMTPSPLVVRESTNLEDAARLLLETKYRRLPVVDNSGKLVGLLTRGNVIKAALEMKHAV
D5AB13_________________MGVYSVSAAMASAATYSAGYCFCCCSIPPNSNSIYMTRFPVQLNRGTMAKLSKHQHQLSRGFAEGFRGLHINTTRLHLPKSTLMATDVPPKHEVFTVGDFMTRKENLIVVKPTTMVDEAMESLVANRITGLPVVDNDWKLVGVVSDYDLLALDSISGAGRTETGFFPQVGSTWKAFNELQNLLNKTNGKIVAEVMTPSPLVIRETTNLEDAARLLLETKYRRLPVVDNSGKLVGILTRGNVIKAALKMKRAV

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
122		80	20		0.995493
154	80		20		0.995493
273		42		57	1.0
370	12	87			0.992554
432	87	12			0.992554
433	87	12			0.992554
490	85		14		0.993533
593		62		37	1.0
907		75	25		0.996473
909		75		25	0.996473
910		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain