SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2362

Length: 535 nt

UniGene Fasta

>biog2_v2.0_unigene2362
TGAGAAGGATTGCTGAAGGAGCTTGCTATGATCAGGACCAAAGGAGAAGCTGGTACTGGTAATGTTATTGAAGCAGTAAGACACGTAAGGTCTGTTTTGGGTGATATACGTAAGCTTCAGAGCTTGGATGATGACGAAGTTTTTACCTTTGCTAAACAAATTGCTGCTCCCTATGAGCTTGTGAGGCAAACCAAGCAGCTGGGAAGGCTTCCTGTTGTGAATTTTGCAGCAGGAGGTGTTGCTACACCTGCCGATGCTGCCTTGATGATGCAGCTAGGTTGTGATGGTGTTTTTGTAGGTTCAGGCGTGTTCAAAAGCGGTGATCCAGCTCGTCGGGCTCGAGCAATTGTACAGGCTGTAACTCACTATAATGACTCCCGCGTTCTGGCTGAGGTCAGTTGTGATTTAGGAGAAGCCATGGTCGGAATCAATCTCAATGACGAAAAAGTGGAGCGATATGCAGAGAGATCAGAGTAAAATCAGAGTAAAATCATGGAGAATACTTAAAGATGACGTTAGAGTAGAAGCTTGATTT

Ace file of the UniGene biog2_v2.0_unigene2362

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3354	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Probable pyridoxal biosynthesis protein PDX1 n=2 Tax=Spermatophyta RepID=PDX1_GINBI	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	pyridoxal phosphate biosynthetic process	GO:0042823	Biological Process	93%
Blast2go	response to UV-B	GO:0010224	Biological Process	93%
Blast2go	chlorophyll metabolic process	GO:0015994	Biological Process	93%
Blast2go	response to non-ionic osmotic stress	GO:0010335	Biological Process	93%
Blast2go	pyridoxine biosynthetic process	GO:0008615	Biological Process	93%
Blast2go	hyperosmotic salinity response	GO:0042538	Biological Process	93%
Blast2go	cellular amino acid metabolic process	GO:0006520	Biological Process	93%
Blast2go	response to lipid hydroperoxide	GO:0006982	Biological Process	93%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	93%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	93%
Blast2go	catalytic activity	GO:0003824	Molecular Function	93%
Blast2go	cytosol	GO:0005829	Cellular Component	93%
Blast2go	endomembrane system	GO:0012505	Cellular Component	93%
Blast2go	plasma membrane	GO:0005886	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Vitamin B6 biosynthesis protein	IPR001852	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8T3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 159 - 309

Fln protein: *EGLLKELAMIRTKGEAGTGNVIEAVRHVRSVLGDIRKLQSLDDDEVFTFAKQIAAPYELVRQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYNDSRVLAEVSCDLGEAMVGINLNDEKVERYAERSE*

Protein Length: 160

Fln nts: TGAGAAGGATTGCTGAAGGAGCTTGCTATGATCAGGACCAAAGGAGAAGCTGGTACTGGTAATGTTATTGAAGCAGTAAGACACGTAAGGTCTGTTTTGGGTGATATACGTAAGCTTCAGAGCTTGGATGATGACGAAGTTTTTACCTTTGCTAAACAAATTGCTGCTCCCTATGAGCTTGTGAGGCAAACCAAGCAGCTGGGAAGGCTTCCTGTTGTGAATTTTGCAGCAGGAGGTGTTGCTACACCTGCCGATGCTGCCTTGATGATGCAGCTAGGTTGTGATGGTGTTTTTGTAGGTTCAGGCGTGTTCAAAAGCGGTGATCCAGCTCGTCGGGCTCGAGCAATTGTACAGGCTGTAACTCACTATAATGACTCCCGCGTTCTGGCTGAGGTCAGTTGTGATTTAGGAGAAGCCATGGTCGGAATCAATCTCAATGACGAAAAAGTGGAGCGATATGCAGAGAGATCAGAGTAA___AATCAGAGTAAAATCATGGAGAATACTTAAAGATGACGTTAGAGTAGAAGCTTGATTT

Fln Alignment:

Contig2362___AMIRTKGEAGTGNVIEAVRHVRSVLGDIRKLQSLDDDEVFTFAKQIAAPYELVRQTKQLGRLPVVNFXXXXXXXXXXXXLMMQLGCDXXXXXXXXXXXXDPARRARAIVQAVTHYNDSRVLAEVSCDLGEAMVGINLNDEKVERYAERSE
D5A8T3_________________AMIRTKGEAGTGNVIEAVRHVRSVLGDIRKLQSLDDDEVFTFAKQIAAPYELVRQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYNDPHVLAEVSCDLGEAMVGINLNDEKVERYAERSE

SNPs (tot: 3)

Position	A %	C %	T %	Probability
298	83		16	0.994512
341		80	20	0.995493
424		80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain