SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2361

Length: 241 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene2361
GGGAGGCAGTGGTTTGTTGGATCGGCTATCTGTAAAGCAGCAGTTGCAAAGGGCATTGAAGCTGTCAGCCTGAGCAGGTCAGGGCGACCTCCATACGTAGATTCGTGGGTAGATCAAGTTACATGGGTAGCAGGTGATGTTTTCTATGCAGAGTGGGATGGATTACTTCGTGGTGCTACTGCTGTTGTTTCTACCCTTGGAGGCTTTGGTACAAATGAACAAATGGAGAAGATAAATGGAG

Ace file of the UniGene biog2_v2.0_unigene2361 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1326	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	NAD(P)-binding Rossmann-fold-containing protein [Arabidopsis thaliana] sp\|Q9FVR6.1\|Y1222_ARATH RecName: Full=Uncharacterized protein At1g32220, chloroplastic; Flags: Precursor gb\|AAG23446.1\|AC084165_12 unknown protein [Arabidopsis thaliana] gb\|AAM64920.1\|	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	uncharacterized protein chloroplastic-like	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	84%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	84%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	84%
Blast2go	isomerase activity	GO:0016853	Molecular Function	84%
Blast2go	plastoglobule	GO:0010287	Cellular Component	84%
Blast2go	thylakoid	GO:0009579	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ74

Fln msg: Distance to subject end: 148 aas, your sequence is shorter than subject: 80 - 320

Fln protein: GRQWFVGSAICKAAVAKGIEAVSLSRSGRPPYVDSWVDQVTWVAGDVFYAEWDGLLRGATAVVSTLGGFGTNEQMEKING

Protein Length: 81

Fln nts: GGGAGGCAGTGGTTTGTTGGATCGGCTATCTGTAAAGCAGCAGTTGCAAAGGGCATTGAAGCTGTCAGCCTGAGCAGGTCAGGGCGACCTCCATACGTAGATTCGTGGGTAGATCAAGTTACATGGGTAGCAGGTGATGTTTTCTATGCAGAGTGGGATGGATTACTTCGTGGTGCTACTGCTGTTGTTTCTACCCTTGGAGGCTTTGGTACAAATGAACAAATGGAGAAGATAAATGGAG

Fln Alignment:

Contig2361___GRQWFVGSAICKAAVAKGIEAVSLSRSGRPPYVDSWVDQVTWVAGDVFYAEWDGLLRGATAVVSTLGGFGTNEQMEKING
C0PQ74_________________GGSGFVGSAICKAAVARGIEAVSLSRLGRPTYIDSWVDQVTWVAGDVFYADWDGLLRGATAVVSTLGGFGTNEQMEKING

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain