SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2297

Length: 496 nt

UniGene Fasta

>biog2_v2.0_unigene2297
ATAATGCTGATATTTCTCTTCGCTATGATGCAACTGCAGATGACCTTATAGATGTGATTGAAGGTAGTCGCATATATATGCCTTGCATATATGTTGTTAACAAGATTGACCAGATAACTCTCGAGGAATTGGAGATTTTGGATAAATTGCCTCACTACTGCCCAGTCAGTGCCCACCTGGAATGGAATTTGGATGGCCTATTGGAGAAGATATGGGAGTACTTAAATTTGACCCGAATATATACAAAGCCCAAGGGATTGAATCCGGACTATGAAGATCCTGTTATTCTTTCATCTAAATCACGAACTGTTGAAGATTTTTGTACTCGAATCCACAAGGATATGTTGAAGCAATTTAAATATGCATTGGTATGGGGTTCTAGCGCAAAACACAAACCTCAGAGGGTTGGGAAGGATCATGAATTAGAGGATGAGGATGTAGTGCAGATTATAAAGAAGATATAAAGATGGGGTAATTACTACTAGACTTACAATAG

Ace file of the UniGene biog2_v2.0_unigene2297

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1484	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein-relatedlike protein n=2 Tax=Arabidopsis RepID=Q9SVA6_ARATH	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	developmentally-regulated gtp-binding protein 1	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	GTP catabolic process	GO:0006184	Biological Process	94%
Blast2go	GTP binding	GO:0005525	Molecular Function	94%
Blast2go	GDP binding	GO:0019003	Molecular Function	94%
Blast2go	GTPase activity	GO:0003924	Molecular Function	94%
Blast2go	intracellular	GO:0005622	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Sma3	GTP1/OBG, conserved site	IPR006074	-	-
Sma3	GTP binding domain	IPR006073	-	-
Sma3		IPR002917	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	TGS	IPR004095	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACC2

Fln msg: your sequence is shorter than subject: 154 - 369

Fln protein: NADISLRYDATADDLIDVIEGSRIYMPCIYVVNKIDQITLEELEILDKLPHYCPVSAHLEWNLDGLLEKIWEYLNLTRIYTKPKGLNPDYEDPVILSSKSRTVEDFCTRIHKDMLKQFKYALVWGSSAKHKPQRVGKDHELEDEDVVQIIKKI*

Protein Length: 155

Fln nts: ATAATGCTGATATTTCTCTTCGCTATGATGCAACTGCAGATGACCTTATAGATGTGATTGAAGGTAGTCGCATATATATGCCTTGCATATATGTTGTTAACAAGATTGACCAGATAACTCTCGAGGAATTGGAGATTTTGGATAAATTGCCTCACTACTGCCCAGTCAGTGCCCACCTGGAATGGAATTTGGATGGCCTATTGGAGAAGATATGGGAGTACTTAAATTTGACCCGAATATATACAAAGCCCAAGGGATTGAATCCGGACTATGAAGATCCTGTTATTCTTTCATCTAAATCACGAACTGTTGAAGATTTTTGTACTCGAATCCACAAGGATATGTTGAAGCAATTTAAATATGCATTGGTATGGGGTTCTAGCGCAAAACACAAACCTCAGAGGGTTGGGAAGGATCATGAATTAGAGGATGAGGATGTAGTGCAGATTATAAAGAAGATATAA___AGATGGGGTAATTACTACTAGACTTACAATAG

Fln Alignment:

Contig2297___NADISLRYDATADDLIDVIEGSRIYMPCIYVVNKIDQITLEELEILDKLPHYCPVSAHLEWNLDGLLEKIWEYLNLTRIYTKPKGLNPDYEDPVILSSKSRTVEDFCTRIHKDMLKQFKYALVWGSSAKHKPQRVGKDHELEDEDVVQIIKKI
D5ACC2_________________NADISLRYDASADDLIDVIEGSRIYMPCIYVVNKIDQITLEELEILDKLPHYCPISAHLEWNMDGLLEKIWEYLNLTRIYTKPKGLNPDYEDPVILSSKSRTVEDFCTRIHKDMLKQFKYALVWGSSAKHKPQRVGKDHELEDEDVVQIIKKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain