SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2225

Length: 1078 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2225

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19965	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=5 Tax=Pinaceae RepID=Q1L6F3_PINLA	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	leucine rich repeat family expressed	-	-	63%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3		IPR014011	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKQ3

Fln msg: your sequence is shorter than subject: 280 - 813

Fln protein: GQMEEQNWCQINFPEVEALALFFAASQYCLPTFLHTMPKLKVVLIYNYGSKRATLHRLPNFPSFTHLKSVLVERLIVSSPFEYCRFSGNLEKLSVCLCEGLGNMTSLDKGHDFPTSPKFQEINFDHCSDLEELPGNICNLTYLQKLSVTNCHLIQKLPDDFGRLRSLRVLRLSACPSLSMLPPSICALQRLEFLDISLCRSLKDLPMEFDQLSNLKILDMRECSGLKKLPKALAKLRSLRCVICDESTERQWLAIKASTMPNLVVEVIEERFNLDWLDD*

Protein Length: 281

Fln nts: CAGGTCAAATGGAAGAGCAAAATTGGTGTCAAATAAATTTTCCTGAAGTGGAAGCTTTGGCTTTGTTCTTTGCTGCAAGTCAATACTGTCTCCCAACCTTTTTACATACCATGCCAAAATTGAAGGTTGTTCTAATATACAATTACGGTTCTAAGCGTGCAACACTTCATAGGCTGCCAAACTTTCCTTCATTTACACATCTTAAATCTGTGCTAGTTGAGAGGTTGATTGTGTCTTCTCCTTTCGAGTACTGTAGATTCTCTGGGAACCTGGAAAAGTTGTCTGTATGCCTATGTGAGGGTTTGGGGAATATGACTTCATTGGATAAGGGACATGACTTTCCAACGTCTCCAAAATTTCAAGAAATTAACTTTGACCACTGCAGTGATTTGGAGGAACTGCCTGGAAACATATGCAATTTAACTTACCTCCAGAAGTTATCTGTCACTAATTGTCATCTTATCCAAAAGTTACCTGATGACTTTGGGAGGTTAAGGTCACTTAGGGTGCTGAGATTGTCTGCATGCCCAAGTTTGTCAATGCTTCCTCCTTCCATTTGTGCACTTCAGCGACTCGAATTTCTTGATATTTCATTATGCAGGTCTTTGAAGGACCTTCCCATGGAATTTGATCAGCTATCAAACTTAAAGATTCTGGATATGAGGGAGTGCTCTGGACTGAAGAAGCTGCCTAAAGCATTAGCCAAACTAAGATCTCTCAGATGTGTAATCTGTGATGAGAGCACTGAACGACAGTGGCTGGCTATCAAAGCCTCTACCATGCCTAATCTCGTAGTTGAGGTCATCGAAGAACGTTTTAATTTGGATTGGCTTGATGATTGA___AAAAGTTCATGATGCCTCAACTTGGTTGCTTCAACGCCTTTAATTCAGTAACTTATGCTGGTGAATTGTCTAAATTTAAACAGAACAGAGGATTGCTTCTAAGATTGGACTGATTGTATTATGTTCTTAGAGCTTAGGGTTGTCGTGATATCCTAGGATGTTCCATGTTTTCTCAATTAACTTGTACATTACTGTATATATTCATATACTTTGAGCGCACTAACTCTTCTGAGAAT

Fln Alignment:

Contig2225___GQMEEQNWCQINFPEVEALALFFAASQYCLPTFLHTMPKLKVVLIYNYGSKRATLHRLPNFPSFTHLKSVLVERLIVSSPFEYCRFSGNLEKLSVCLCEGLGN--MTSLDKGHDFPTSPKFQEINFDHCSDLEELPGNICNLTYLQKLSVTNCHLIQKLPDDFGXXXXXXXXXXXACPSLSMLPPSICALQRLEFLDISLCRSLKDLPMEFDQLSNLKILDMRECSGXXXXXXXXXXXRSLRCVICDESTERQWLAIKASTMPNLVVEVIEERFNLDWLDD
B8LKQ3_________________GQME-QEWGQIHFPEVETLALFFEASQYRLPTFLRTMPKLKVVIIYNYSSKRAKLHGLPSFSLFTQIKSVVLERLDVSALYGYCRSSESLEKFSLCLCEGFGNTPLPSLEK-FSVIQFPKFIEINFDHCSDLEQLPEKICNLTSLQRLSVTNCHLIQKLPDDLGKLRSLRMLRLSACLNLSMLPASICELHQLECLDISLCGSLKNFPNEFHRLSKLKMLDMRECSGLKKLPEALTKLRSLTRVTCDEHTERQWLSIKASAMPNLIIVVVKECFNLDWLEN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain