SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2219

Length: 346 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene2219
TTAATGCGCTCTCAGACTTCATGATCTCTCGAATTCAAGAGCTGCACTTAAAGTGGGAGAATGATGACAATGTCAACTTAGTAATTATCAAGGGCATAGGAAGGGCATTTTGTTCTGGTGGTGATGTTGCAGAAATTTGCCGTCTAGGAAATGCAGGTAACTACAGTCGGTCTGCATACTATTTCTGGCTTGAATATATCATGAACTATATACTCGGAACATACAGAAAGCCCCAAGTTGCTTTGCTAAATGGGATTGTCATGGGAGGAGGTGCTGGCATTTCCATGCATGGGAAGTTTCGAGTGGCGACAGAGAACACTCTCTTTGCAATGCCAGAAACAGGATT

Ace file of the UniGene biog2_v2.0_unigene2219 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1851	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	3-hydroxyisobutyryl-CoA hydrolase 1 [Arabidopsis thaliana] sp\|Q9LKJ1.1\|HIBC1_ARATH RecName: Full=3-hydroxyisobutyryl-CoA hydrolase 1; AltName: Full=CoA-thioester hydrolase CHY1 gb\|AAF77193.1\|AF276301_1 CoA-thioester hydrolase CHY1 [Arabidopsis thaliana] d	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	3-hydroxyisobutyryl-coenzyme a expressed	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	3-hydroxyisobutyryl-CoA hydrolase.	EC:3.1.2.4	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Valine, leucine and isoleucine degradation	00280	75%
Blast2go	beta-Alanine metabolism	00410	75%
Blast2go	Propanoate metabolism	00640	75%
Blast2go	Metabolic pathways	01100	75%

Source	GOs	Term	Type	Identity
Blast2go	xanthophyll biosynthetic process	GO:0016123	Biological Process	75%
Blast2go	response to cold	GO:0009409	Biological Process	75%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	75%
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	75%
Blast2go	valine catabolic process	GO:0006574	Biological Process	75%
Blast2go	carotene metabolic process	GO:0016119	Biological Process	75%
Blast2go	3-hydroxyisobutyryl-CoA hydrolase activity	GO:0003860	Molecular Function	75%
Blast2go	lyase activity	GO:0016829	Molecular Function	75%
Blast2go	carotene beta-ring hydroxylase activity	GO:0010291	Molecular Function	75%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	75%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Crotonase, core	IPR001753	-	0.0	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAS3

Fln msg: Distance to subject end: 110 aas, your sequence is shorter than subject: 114 - 269

Fln protein: NALSDFMISRIQELHLKWENDDNVNLVIIKGIGRAFCSGGDVAEICRLGNAGNYSRSAYYFWLEYIMNYILGTYRKPQVALLNGIVMGGGAGISMHGKFRVATENTLFAMPETG

Protein Length: 115

Fln nts: TTAATGCGCTCTCAGACTTCATGATCTCTCGAATTCAAGAGCTGCACTTAAAGTGGGAGAATGATGACAATGTCAACTTAGTAATTATCAAGGGCATAGGAAGGGCATTTTGTTCTGGTGGTGATGTTGCAGAAATTTGCCGTCTAGGAAATGCAGGTAACTACAGTCGGTCTGCATACTATTTCTGGCTTGAATATATCATGAACTATATACTCGGAACATACAGAAAGCCCCAAGTTGCTTTGCTAAATGGGATTGTCATGGGAGGAGGTGCTGGCATTTCCATGCATGGGAAGTTTCGAGTGGCGACAGAGAACACTCTCTTTGCAATGCCAGAAACAGGATT

Fln Alignment:

Contig2219___NALSDFMISRIQELHLKWENDDNVNLVIIKGIGRAFCSGGDVAEICRLGNAGNYSRSAYYFWLE-----YIMNYILGTYRKPQVALLNGIVMGGGAGISMHGKFRVATENTLFAMPETG
D5AAS3_________________NIITSKVVARLAELHEKWENENGAELIIIKGTGRAFSAGGDLRMF--------YEGRADESWIEVVYRMYWLQYHIHTYKKTLVSIVHGLAMGGGASLAVPTTFSVVTEKTVFATPEAG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain