SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2080

Length: 1158 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2080 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4042	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	Microtubule-associated protein TORTIFOLIA1, putative n=1 Tax=Ricinus communis RepID=B9SP95_RICCO	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	HEAT	IPR000357	-	0.0	-
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAK8

Fln msg: Overlapping hits, possible frame ERROR between 601 and 579, your sequence is longer than subject: 349 - 257

Fln protein: MRSLESRVHGLERTVDEMAQDLAVSTGRLSNSSIEGGRGTCCKFPGTEFLSSKFWRKSDGRYATVRIATSDASSLSKFGGTTDNPDNRRHKGMHGGFIVNPLADIRGASRKESIESISDSSQKPILENLKGDNLMTGSLDRNRFGEGPSARSVWKASKDEATLSAIxxxxxxxxxRVGICKRKFKANTLDTSTENLSSSRSRHGTIFWSVWTRAVEFLRTGDVDSAFVEVLCTGDDLLLLRLMNRTGPVLEHLSQGTIVEMMQTIVQFLMKHKYLESIILWFQQVVDLASNGPDCLDLPPEAKKALYQP*KKPHHCVSWMLQIDILYLRLHQNCQISGLQICQEAGNE*

Protein Length: 350

Fln nts: GCAACTTTTTCAGATTGAAAACCAGCAATCCAGCCTGTTGGATCTTATTCAGAATTTTATAGGAAGCTCACAAGAGGGT_-_ATGCGATCCTTAGAATCAAGGGTTCATGGCTTAGAACGGACTGTTGATGAAATGGCTCAGGATCTAGCTGTATCTACAGGTAGGCTGTCTAATTCTAGTATTGAAGGTGGCAGGGGTACATGTTGTAAGTTCCCTGGTACAGAATTTTTAAGCTCCAAGTTTTGGAGAAAAAGTGATGGAAGATATGCAACTGTAAGAATTGCAACATCTGATGCGTCATCCTTGAGTAAATTTGGAGGAACAACAGATAACCCAGATAATAGAAGGCATAAAGGCATGCATGGTGGTTTTATAGTGAACCCCTTGGCAGATATTAGAGGGGCTTCAAGGAAAGAGAGTATCGAGTCTATTTCAGACAGCTCTCAGAAGCCTATATTAGAGAACTTGAAAGGAGATAATCTAATGACTGGATCACTAGACAGGAATAGGTTTGGTGAGGGTCCCTCTGCAAGGAGTGTTTGGAAAGCCTCGAAGGATGAAGCTACTCTCTCTGCTATAxxxxxxxxxxxxxxxxxxxxxxxxxxxAGAGTTGGAATCTGTAAAAGAAAATTCAAGGCCAACACTTTGGACACTAGCACTGAAAACTTATCTTCTAGCAGATCAAGACATGGTACTATTTTCTGGAGTGTTTGGACACGTGCTGTAGAGTTTCTGCGAACAGGAGATGTAGACTCTGCATTTGTTGAGGTCCTCTGTACTGGGGATGATCTCTTATTGCTGAGGCTTATGAATCGGACTGGCCCTGTCCTGGAGCACTTGTCACAAGGGACCATTGTTGAAATGATGCAGACGATCGTGCAGTTCTTGATGAAGCATAAATACTTGGAATCAATAATCCTTTGGTTTCAGCAGGTTGTTGACTTGGCAAGTAATGGTCCGGATTGTCTGGACCTACCTCCTGAAGCAAAAAAGGCACTTTATCAGCCTTAAAAGAAGCCCCATCACTGCGTTTCATGGATGCTTCAAATAGACATACTATATCTCAGATTGCATCAAAACTGTCAAATATCTGGGCTGCAGATTTGTCAAGAAGCAGGTAATGAGTAG___CTGCAGACTTTTTGCTGAGAAGCAGGTAATGACT

Fln Alignment:

Contig2080___MHGGFIVNPLADIRGASRKESIESISDSSQKPILENLKGDNLMTGSLDRNRFGEGPSARSVWKASKDEATLSAIRVAxxxxxMENRVGICKRKFKANTLDTSTENLSSSRSRHG-TIFWSVWTRAVEFLRTGDVDSAFVEVLCTGDDXXXXXLMNRTGPVLEHLSQGTIVEMMQTIVQFLMKHKYLESIILWFQQVVDL-ASNGPDCLDLPPEAKK
D5AAK8_________________MHGGFIVNPLADIRGASRKESIESISDSTQRPISENSKGDQIMTGSLDRNRFGEGPSARSVWKASKDEATLSAIRVAxxxxxTEELESV-KENSRPNTLDPSTENLSSSKSRHGSTVFWSVWTRAVDFLRTGDVDSAFVEVLCPGDDLLLIRLMNRTGPVLEHLSQGTIVEMLQTIMQFLMKQKYLDSIIPWIQQVVDLTASNGPDYLDLPPEAKK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
959	75	25			0.996473
960	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain