SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2070

Length: 1063 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2070 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4202	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	putative 2-dehydro-3-deoxyphosphooctonate aldolase [Oryza sativa Japonica Group]	-	-	80%
FL-Next	sp=2-dehydro-3-deoxyphosphooctonate aldolase; Arabidopsis thaliana (Mouse-ear cress).	-	-	80%
Blast2go	2-dehydro-3-deoxyphosphooctonate aldolase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	3-deoxy-8-phosphooctulonate synthase.	EC:2.5.1.55	-	0.0	91%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Lipopolysaccharide biosynthesis	00540		0.0	91%
Blast2go	Metabolic pathways	01100		0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	rhamnogalacturonan II biosynthetic process	GO:0010306	Biological Process	91%
Blast2go	keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	GO:0019294	Biological Process	91%
Blast2go	lyase activity	GO:0016829	Molecular Function	91%
Blast2go	3-deoxy-8-phosphooctulonate synthase activity	GO:0008676	Molecular Function	91%
Blast2go	endomembrane system	GO:0012505	Cellular Component	91%
Blast2go	plastid	GO:0009536	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	DAHP synthetase I/KDSA	IPR006218	-	-
Sma3	3-deoxy-8-phosphooctulonate synthase	IPR006269	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9AV97

Fln msg: Overlapping hits, possible frame ERROR between 619 and 616,

Fln protein: MVSPSALYNHLKEAEPFFLLVGPNVIESEEHVLKMARQIKSVAEKLGLQLVFKSSFDKANRTSAKSFRGPGLEEGLKILERVKTTFDLPIVTDVHEAYQCEPVGRIADIIQIPAFLCRQTDLLESAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVxxxNIEWLRDAHCPVVADVTHALQQPAGRKLEGGGVASGGLRELIPCIARTCVAVGVDGIFMEVHDNPLEAPVDGPTQWPLQNLEELLEELMAIARVTKGKQKFKINLTPVDEEF*

Protein Length: 294

Fln nts: CACAAGGCCATCACATTGCAGTCCAGTTTGCTAAATTTCAGACATCTCCGAATTCGTGGGCTCCGTCCGAGAAAGGATCAGC_-_ATGGTTTCCCCTTCAGCATTGTACAATCATCTCAAGGAAGCAGAACCCTTCTTTTTGCTTGTGGGGCCCAATGTAATAGAATCAGAGGAGCACGTCCTCAAAATGGCAAGACAGATTAAATCTGTAGCAGAAAAGCTTGGATTGCAATTAGTTTTCAAGTCGAGCTTTGACAAAGCCAATCGAACTTCAGCAAAGTCATTCCGTGGCCCTGGGCTAGAAGAGGGTTTGAAGATATTGGAAAGGGTTAAGACCACTTTTGACTTACCGATTGTAACAGATGTCCATGAAGCTTATCAGTGTGAGCCTGTTGGCAGAATTGCAGATATTATTCAAATACCGGCATTTCTATGTCGCCAGACAGATCTTCTTGAATCTGCAGCAAAGACAGGGAAAATTATCAATATCAAGAAAGGTCAATTTTGCGCTTCATCGGTAATGGTAAACTCTGCTGAGAAAGTCAGATTAGCAGGCAACCCAAATGTAATGGTTTGTGAGCGCGGCACGATGTTTGGATATAATGACTTGATTGTTxxxxxxxxxAATATAGAGTGGTTAAGGGATGCACATTGTCCGGTGGTAGCGGATGTTACACATGCATTGCAGCAGCCAGCTGGTAGAAAGCTTGAAGGTGGAGGAGTTGCAAGCGGGGGCCTGCGGGAATTGATACCTTGTATTGCCAGGACTTGTGTAGCAGTAGGGGTTGATGGCATTTTTATGGAGGTACATGATAATCCACTTGAAGCTCCAGTTGACGGCCCAACACAGTGGCCACTTCAGAATTTGGAGGAGTTACTCGAGGAGCTTATGGCGATTGCAAGAGTAACCAAGGGAAAGCAAAAGTTTAAAATAAACCTGACTCCTGTTGATGAAGAATTCTGA___CATCATATATGTGTAGGTGCTCTATGTCAAGGATCAAGGTAGTACAAAATTGATGAGGCATATTTTGGAAATTAGGAAGTAAAAAGGGACAATCTCTCATAGG

Fln Alignment:

Contig2070___MVSPSALYNHLKEAEPFFLLVGPNVIESEEHVLKMARQIKSVAEKLGLQLVFKSSFDKANRTSAKSFRGPGLEEGLKILERVKTTFDLPIVTDVHEAYQCEPVGRIADIIQIPAFLCRQTDLLESAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDxCNIEWLRDAHCPVVADVTHALQQPAGRKLEGGGVASGGLRELIPCIARTCVAVGVDGIFMEVHDNPLEAPVDGPTQWPLQNXXXXXXXLMAIARVTKGKQKFKINLTP
Q9AV97_________________MAATSLLYNQLKAAEPFFLLAGPNVIESEEHILRMAKHIKDISTKVGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKVADIIQIPAFLCRQTDLLVAAAQTGKIINIKKGQFCAPSVMENSAEKIRLAGNPNVMVCERGTMFGYNDLIVDxRNFEWMREANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLSAPVDGPTQWPLRHLEELLEELIAIARVTKGKQRLQIDLTP

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
53	80		20		0.995493
65		80		20	0.995493
313	66	33			0.997452
316			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain