SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1943

Length: 530 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene1943
TTTCAGCATGCCTTCAATCGAGGAATCACATTTTTTGACACTGCCGACCTGTACGGTGATTTTACCAATGAAATATTGGTTGGGAAGGGCTTGAAACACTTGCCTAGAGACAAAATTCAGCTTGCCACAAAGTTTGGAGCTGTGATAAAGGATAACTCAATTGTTGAAATTGTTGGCACTGCTGAATATGTGAGGAAGGCTTGTGAAGCTAGCCTGCAACGCCTGGATGTCGAATACATCGACTTATACTACCAGCATCGCGTAGACAAAAGAGTTCCCATTGAAGAAACGGTAGGGGAAATGAAGAAGCTTGTGGAAGAGGGAAAAGTAAAGTACATTGGACTTTGCGAAGTCAGCGTTGACACCCTACGAAGAGCCCATGCTGTACATCCCATCACTGCAGTTCAGTATGAGTGGTCTTTATGGTCTAGGGACATTGAAAATGAAATAATCCCCGCATGCAGGGAGCTTGGTATTGGGATTGTTCCTTATAGCCCACTAGGTCGGGGCTTTTTCTCGGGGAAAGCATT

Ace file of the UniGene biog2_v2.0_unigene1943 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6384	1/6
SustainPine v2.0	sp_v2.0_unigene29602	5/6

Source	Descriptions	Term	Type	Identity
AutoFact	perakine reductase [Rauvolfia serpentina]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	aldo keto	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldo/keto reductase	IPR001395	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKC0

Fln msg: Distance to subject end: 120 aas, your sequence is shorter than subject: 176 - 343

Fln protein: FQHAFNRGITFFDTADLYGDFTNEILVGKGLKHLPRDKIQLATKFGAVIKDNSIVEIVGTAEYVRKACEASLQRLDVEYIDLYYQHRVDKRVPIEETVGEMKKLVEEGKVKYIGLCEVSVDTLRRAHAVHPITAVQYEWSLWSRDIENEIIPACRELGIGIVPYSPLGRGFFSGKA

Protein Length: 177

Fln nts: TTTCAGCATGCCTTCAATCGAGGAATCACATTTTTTGACACTGCCGACCTGTACGGTGATTTTACCAATGAAATATTGGTTGGGAAGGGCTTGAAACACTTGCCTAGAGACAAAATTCAGCTTGCCACAAAGTTTGGAGCTGTGATAAAGGATAACTCAATTGTTGAAATTGTTGGCACTGCTGAATATGTGAGGAAGGCTTGTGAAGCTAGCCTGCAACGCCTGGATGTCGAATACATCGACTTATACTACCAGCATCGCGTAGACAAAAGAGTTCCCATTGAAGAAACGGTAGGGGAAATGAAGAAGCTTGTGGAAGAGGGAAAAGTAAAGTACATTGGACTTTGCGAAGTCAGCGTTGACACCCTACGAAGAGCCCATGCTGTACATCCCATCACTGCAGTTCAGTATGAGTGGTCTTTATGGTCTAGGGACATTGAAAATGAAATAATCCCCGCATGCAGGGAGCTTGGTATTGGGATTGTTCCTTATAGCCCACTAGGTCGGGGCTTTTTCTCGGGGAAAGCATT

Fln Alignment:

Contig1943___FQHAFNRGITFFDTADLYGDFTNEILVGKGLKHLPRDKIQLATKFGAVIKDNSIVEIVGTAEYVRKACEASLQRLDVEYIDLYYQHRVDKRVPIEETVGEMKKLVEEGKVKYIGLCEVSVDTLRRAHAVHPITAVQYEWSLWSRDIENEIIPACRELGIGIVPYSPLGRGFFSGKA
B8LKC0_________________FQHAFNRGITFFDTADMYGHFTNEILVGKGLKHLPRDKIQLATKFGAVIKEDLSFEIVGTAEYVRKACEASLQRLDVEYIDLYYQHRVDKRVPIEETIGEMKKLVEEGKIKYIGLCEVSVDTLRRAHAVHPITAVQYEWSLWSRELENEIIPTCRELGIGVVPYSPLGRGFFSGKA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
335		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain