SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1893

Length: 394 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene1893
AAAGCAGAGCGTGCTGCTTGCATTATCATGTATCTTTTTTGCTGCTCTTTCATCTGTGATGGGATTTCTGCCTCTCTGGCTGACGGTTCTTCTGCATGAAGGTGGAACACTTTTAGTGTGTGTCAATTCTGCCCGTGCACTGAACAATCCTACTTGGTCATGGACCCATGATTTAAGAAGAGCAGTAGACGATTTGGTGGCATCAATATCCAACATCTTGAAGCAGTTCTCTTCCAATGATGTTCAAGCAGCGCCATCTTAAATGCTAACTAGTCTTCGTTTTATTTTCATTATTTTATGGATCTTATTTCCTAATTTATTTGTATATGCTAGTTGAATTGAGCCATTTGTGCCAAGGCTATTAAGTTCAAATTAAAGCATTAAATATTGTAAC

Ace file of the UniGene biog2_v2.0_unigene1893 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11606	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative cadmium-transporting ATPase [Glycine max]	-	-	2.0e-19	54%
FL-Next	sp=Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	66%
Blast2go	cadmium resistance protein	-	-	4.1188e-27	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Copper-exporting ATPase.	EC:3.6.3.4	-	4.1188e-27	77%
Blast2go	Cadmium-transporting ATPase.	EC:3.6.3.46	-	4.1188e-27	77%
Blast2go	Calcium-transporting ATPase.	EC:3.6.3.8	-	4.1188e-27	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion homeostasis	GO:0055069	Biological Process	4.1188e-27	77%
Blast2go	response to light intensity	GO:0009642	Biological Process	4.1188e-27	77%
Blast2go	calcium ion transport	GO:0006816	Biological Process	4.1188e-27	77%
Blast2go	cellular copper ion homeostasis	GO:0006878	Biological Process	4.1188e-27	77%
Blast2go	ATP biosynthetic process	GO:0006754	Biological Process	4.1188e-27	77%
Blast2go	response to toxin	GO:0009636	Biological Process	4.1188e-27	77%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	4.1188e-27	77%
Blast2go	zinc transporting ATPase activity	GO:0015633	Molecular Function	4.1188e-27	77%
Blast2go	copper-exporting ATPase activity	GO:0004008	Molecular Function	4.1188e-27	77%
Blast2go	cadmium-transporting ATPase activity	GO:0015434	Molecular Function	4.1188e-27	77%
Blast2go	calcium-transporting ATPase activity	GO:0005388	Molecular Function	4.1188e-27	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	4.1188e-27	77%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	4.1188e-27	77%
Blast2go	integral to membrane	GO:0016021	Cellular Component	4.1188e-27	77%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating	IPR006404	-	-
Sma3	ATPase, P-type, heavy metal translocating	IPR006416	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9M3H5

Fln msg: your sequence is shorter than subject: 87 - 819

Fln protein: KQSVLLALSCIFFAALSSVMGFLPLWLTVLLHEGGTLLVCVNSARALNNPTWSWTHDLRRAVDDLVASISNILKQFSSNDVQAAPS*

Protein Length: 88

Fln nts: AAAGCAGAGCGTGCTGCTTGCATTATCATGTATCTTTTTTGCTGCTCTTTCATCTGTGATGGGATTTCTGCCTCTCTGGCTGACGGTTCTTCTGCATGAAGGTGGAACACTTTTAGTGTGTGTCAATTCTGCCCGTGCACTGAACAATCCTACTTGGTCATGGACCCATGATTTAAGAAGAGCAGTAGACGATTTGGTGGCATCAATATCCAACATCTTGAAGCAGTTCTCTTCCAATGATGTTCAAGCAGCGCCATCTTAA___ATGCTAACTAGTCTTCGTTTTATTTTCATTATTTTATGGATCTTATTTCCTAATTTATTTGTATATGCTAGTTGAATTGAGCCATTTGTGCCAAGGCTATTAAGTTCAAATTAAAGCATTAAATATTGTAAC

Fln Alignment:

Contig1893___KQSVLLALSCIFFAALSSVMGFLPLWLTVLLHEGGTLLVCVNSARALNNPTWSWTHDLRRAVDDL
Q9M3H5_________________KQNVALALTSIFLAALPSVLGFVPLWLTVLLHEGGTLLVCLNSVRGLNDPSWSWKQDIVHLINKL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
211		25		75	0.996473
212		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain