SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1823

Length: 584 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1823

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23104	1/7
SustainPine v2.0	sp_v2.0_unigene23368	6/7

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative p23 co-chaperone n=1 Tax=Cryptomeria japonica RepID=Q1XG56_CRYJA	-	-	3.00018e-42	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	uncharacterized protein _027940-like	-	-	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidic acid phosphatase type 2/haloperoxidase	IPR000326	-	-
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Sterol-sensing domain	IPR000731	-	-
Sma3	Ricin B lectin domain	IPR000772	-	-
Sma3	Peptidase M12B, ADAM/reprolysin	IPR001590	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Blood coagulation inhibitor, Disintegrin	IPR001762	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Cell surface receptor IPT/TIG	IPR002909	-	-
Sma3	Patched	IPR003392	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3		IPR003612	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Protein of unknown function DUF285, lipoprotein predicted	IPR005046	-	-
Sma3	Peptidase, metallopeptidase	IPR006026	-	-
Sma3	Outer membrane autotransporter barrel	IPR006315	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Extensin repeat	IPR006706	-	-
Sma3	CS-like domain	IPR007052	-	-
Sma3	Peptidase M11, gametolysin	IPR008752	-	-
Sma3	Glycine rich protein	IPR010800	-	-
Sma3	Bacterial surface protein 26-residue repeat	IPR011889	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Peptidase M10B, serralysin, C-terminal	IPR013858	-	-
Sma3	CS domain	IPR017447	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
130	33	66			0.997452
131			66	33	0.997452
133	66		33		0.997452
134	66		33		0.997452
429	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain