SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1682

Length: 542 nt

UniGene Fasta

>biog2_v2.0_unigene1682
GAATATATAGGTGAGATGGGCAAGGACTACATATATGCAGTGACACCATTACTTGAAGATGCACTTATGGATAGAGATCTTGTGCACAGGCAAACAGCAGCTTCAGCAGTGAAACACACGGCTTTGGGTGTTGCAGGACTTGGCTGTGAGGATGCTTTGGTTCATTTGATGAATTATGTATGGCCTAATATATTTGAGACTTCGCCTCATGTCATAAATGCTGTCATGGAAGCCATTGAAGGGATGCGTGTCGCATTAGGACCAGCAGTAATTTTAAACTATTGCCTACAAGGCTTATTTCACCCTGCAAGAAAAGTGCGCGAGGTCTATTGGAAGATTTATAACTCGCTTTATATAGGATCTCAAGATGGACTTGTGGCTGCTTATCCTACATTAGAAGATGAGTCTAATAATATCTTTAGCCGACCAGAACTAGTGATGTTTGTTTAGAATAGAACATGTTATAGTTATAGTTGTAACCTCAACAAAGATGTTTTAATGCTTTGTATCGAAATTTTCTAAGTATCTCCTTGCAGCGGAGA

Ace file of the UniGene biog2_v2.0_unigene1682

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene800	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to splicing factor, putative n=1 Tax=Vitis vinifera RepID=UPI0001983CB2	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	92%
Blast2go	splicing factor 3b subunit 1-like	-	-	97%

Source	GOs	Term	Type	Identity
Blast2go	mRNA processing	GO:0006397	Biological Process	97%
Blast2go	binding	GO:0005488	Molecular Function	97%
Blast2go	chloroplast	GO:0009507	Cellular Component	97%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3		IPR001449	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Splicing factor 3B subunit 1	IPR015016	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A2X0V2

Fln msg: your sequence is shorter than subject: 150 - 249

Fln protein: EYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHTALGVAGLGCEDALVHLMNYVWPNIFETSPHVINAVMEAIEGMRVALGPAVILNYCLQGLFHPARKVREVYWKIYNSLYIGSQDGLVAAYPTLEDESNNIFSRPELVMFV*

Protein Length: 151

Fln nts: GAATATATAGGTGAGATGGGCAAGGACTACATATATGCAGTGACACCATTACTTGAAGATGCACTTATGGATAGAGATCTTGTGCACAGGCAAACAGCAGCTTCAGCAGTGAAACACACGGCTTTGGGTGTTGCAGGACTTGGCTGTGAGGATGCTTTGGTTCATTTGATGAATTATGTATGGCCTAATATATTTGAGACTTCGCCTCATGTCATAAATGCTGTCATGGAAGCCATTGAAGGGATGCGTGTCGCATTAGGACCAGCAGTAATTTTAAACTATTGCCTACAAGGCTTATTTCACCCTGCAAGAAAAGTGCGCGAGGTCTATTGGAAGATTTATAACTCGCTTTATATAGGATCTCAAGATGGACTTGTGGCTGCTTATCCTACATTAGAAGATGAGTCTAATAATATCTTTAGCCGACCAGAACTAGTGATGTTTGTTTAG___AATAGAACATGTTATAGTTATAGTTGTAACCTCAACAAAGATGTTTTAATGCTTTGTATCGAAATTTTCTAAGTATCTCCTTGCAGCGGAGA

Fln Alignment:

Contig1682___EYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHTALGVAGLGCEDALVHLMNYVWPNIFETSPHVINAVMEAIEGMRVALGPAVILNYCLQGLFHPARKVREVYWKIYNSLYIGSQDGLVAAYPTLEDESNNIFSRPELVMFV
A2X0V2_________________EYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGPAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPALDDDGDNIYSRPELAMFV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
119		50		50	1.0
239	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain