SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1553

Length: 573 nt

UniGene Fasta

>biog2_v2.0_unigene1553
CCTATTAATGGTCCATATTCAATACATCAGTTGCGTCAAATCTTCCAACACTATCTCAATATGGCTTGCCACAACGGCCAACAAGTGAATTGAGAAGTTCAGGGGAGACAAGCTCAGTGAGTTCATTGCCTTCGAATTTGACAAACAAGCCGCTAAAATGCTCCTGCGTTTCCAGGTGGTTCTGCTTCAACTGCAACCCCATCTCACATGTATGCATTAGGACCAAATACTGGGGGCCCATCCATTGGGCCTCCCCCAGTGATATCAAATAAACCACCTGCAGCTCAGGGGTTTACTAAGGAGGTGTATTTGGTTTGGGATGATGAAGCAATGTCCATGGAAGAACGAAGGACATCCCTTGCCAAATATCAGGTGCATGACGTGACCTCACAGATGAGCTCTGTTGATGCAGCTATTGATAGAAGGATATTAGAAAGCAGGCTTGCTGGTCGTATGGGGTTTGGAATCTGATCAAGGATTTCATTTTGAAGGTAGCATTAACCGAACACCTTTTTCAACCTATGGAGTTCGTACAACTATCGAAGATAGAACCTGCCAAATTAGTGTATCTTC

Ace file of the UniGene biog2_v2.0_unigene1553

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17414	1/4
SustainPine v2.0	sp_v2.0_unigene24213	3/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1421 multi-domain protein	-	-	9.0e-18	23%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	75%
Blast2go	zinc finger protein	-	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	84%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	84%
Blast2go	DNA binding	GO:0003677	Molecular Function	84%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	84%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	84%
Blast2go	nucleus	GO:0005634	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3		IPR002917	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	GTP-binding protein Era	IPR005662	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7T9P9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 157 - 375

Fln protein: PINGPYSIHQLRQIFQHYLNMACHNGQQVN*EVQGRQAQ*VHCLRI*QTSR*NAPAFPGGSASTATPSHMYALGPNTGGPSIGPPPVISNKPPAAQGFTKEVYLVWDDEAMSMEERRTSLAKYQVHDVTSQMSSVDAAIDRRILESRLAGRMGFGI*

Protein Length: 158

Fln nts: CCTATTAATGGTCCATATTCAATACATCAGTTGCGTCAAATCTTCCAACACTATCTCAATATGGCTTGCCACAACGGCCAACAAGTGAATTGAGAAGTTCAGGGGAGACAAGCTCAGTGAGTTCATTGCCTTCGAATTTGACAAACAAGCCGCTAAAATGCTCCTGCGTTTCCAGGTGGTTCTGCTTCAACTGCAACCCCATCTCACATGTATGCATTAGGACCAAATACTGGGGGCCCATCCATTGGGCCTCCCCCAGTGATATCAAATAAACCACCTGCAGCTCAGGGGTTTACTAAGGAGGTGTATTTGGTTTGGGATGATGAAGCAATGTCCATGGAAGAACGAAGGACATCCCTTGCCAAATATCAGGTGCATGACGTGACCTCACAGATGAGCTCTGTTGATGCAGCTATTGATAGAAGGATATTAGAAAGCAGGCTTGCTGGTCGTATGGGGTTTGGAATCTGA___TCAAGGATTTCATTTTGAAGGTAGCATTAACCGAACACCTTTTTCAACCTATGGAGTTCGTACAACTATCGAAGATAGAACCTGCCAAATTAGTGTATCTTC

Fln Alignment:

Contig1553___NAPAFPGGSASTATPSHMYALGPNTXXXXXXXXXXXXNKPPAAQGFTKEVYLVWDDEAMSMEERRTSLAKYQVHDVTSQMSSVDAAIDRRILESRLAGRMGF
D7T9P9_________________SAPSIQGGPSIN---SHSYASGPNTGGPSIGPPPVIANKVPATQPAGNEVYLVWDDEAMSMEERRMSLMKYQVHDETSQMSSIDAAIDRRILESRLAGRMAF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
353		80		20	0.995493
381		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain