SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1548

Length: 1835 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1548

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8275	38/38

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Probable pleiotropic drug resistance protein 2 emb\|CAD59566.1\| PDR-like ABC transporter [Oryza sativa Japonica Group] tpg\|DAA00885.1\| TPA_exp: PDR2 ABC transporter [Oryza sativa (japonica cultivar-group)]	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACV1

Fln msg: your sequence is longer than subject: 478 - 412

Fln protein: MMFVAEVMELAELTPLRDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYAGPVGRHSHKLIEYFEAVSGVPQITEGYNPATWALEVSSMATEERLGVDFAEIYRKSALHEWNQALIKELSTPAPGSQDLNFPTQYAQSFNVQCTACLWKQHWSYWRNPHYNVVRFFFTTVVALLFGTIFWDLGTKRGKQQDLLNILGSMYCAVLFLGVSNSSSVQPIVEVERTVFYREKAAGMYSALPYALGQVAIEVPYVLMQCVIYAILVYSMIAFEWTAVKFFWFFFIMFFTFLYFTYFGMLTVAVTPNYHIGAIISSAFYSLWNLFCGFIIPRPKMPIWWRWYYWGTPISWTLYGLIASQLGDVETEMVTVDGNVKVSTFIKSYFGMRHDFLGIVALVLVCIPVAFALFFALAIRQLNFQKR*

Protein Length: 479

Fln nts: TAATGGATGTCTTGGCTGGAAGAAAATCAGGGGCTATATAGATGGAAGTATAAGCATCTCTGGGTTCCCGAAGAAGCAAGAAACATTTGCTCGCATCTCAGGGTACTGTGAACAAAATGATATCCACTCTCCAAATGTCACAGTGTTTGAATCACTCGTGTATTCTGCATGGCTCCGTCTTCCTGGCGAGGTTGATGAGAAAACTAGA_-_ATGATGTTTGTGGCAGAAGTCATGGAGCTTGCAGAGCTCACTCCTCTAAGAGATGCCATTGTAGGGCTTCCTGGAGTGACAGGTCTTTCTACAGAGCAAAGGAAGAGACTTACCATAGCAGTGGAACTAGTCGCCAATCCTTCTATAATCTTCATGGATGAGCCAACTTCAGGACTAGATGCTCGTGCTGCAGCGATAGTTATGCGTACTGTTCGCAACACAGTCAATACAGGTCGAACTGTTGTTTGTACCATCCACCAACCCAGCATTGATATCTTTGAAGCTTTTGACGAGCTGTTACTCCTGAAAAGGGGTGGCCAAGTCATCTATGCAGGTCCTGTAGGTCGTCATTCTCATAAACTCATTGAGTATTTTGAGGCTGTTTCAGGAGTTCCACAGATTACAGAAGGATACAATCCAGCAACATGGGCACTAGAAGTGAGTTCCATGGCTACTGAGGAAAGACTTGGTGTAGATTTTGCTGAAATCTACAGAAAATCGGCACTCCATGAATGGAATCAAGCTCTTATTAAAGAGCTAAGCACCCCTGCTCCTGGCTCACAGGATCTGAATTTTCCAACTCAGTATGCACAGTCCTTCAACGTTCAGTGCACGGCCTGTCTTTGGAAGCAACATTGGTCATATTGGAGGAATCCACACTATAATGTTGTGCGGTTTTTCTTCACTACAGTGGTTGCCCTACTGTTTGGGACCATCTTTTGGGACCTTGGAACAAAGAGAGGTAAACAGCAAGATCTACTCAATATTCTGGGATCAATGTACTGTGCTGTACTTTTCCTTGGTGTTAGTAATTCATCAAGTGTCCAGCCAATTGTCGAGGTTGAACGAACTGTCTTTTACAGAGAAAAGGCTGCTGGAATGTATTCAGCACTGCCTTATGCCCTTGGACAGGTGGCAATCGAAGTGCCTTATGTTCTTATGCAGTGTGTAATCTATGCCATCTTGGTCTATTCTATGATTGCTTTCGAGTGGACAGCTGTCAAGTTCTTCTGGTTCTTCTTCATCATGTTTTTCACTTTTCTATACTTTACATATTTTGGAATGCTGACAGTAGCTGTGACTCCAAATTACCATATTGGTGCAATCATTTCATCAGCTTTTTATTCTTTATGGAATCTCTTCTGTGGTTTCATTATTCCTCGACCTAAAATGCCTATATGGTGGAGATGGTACTACTGGGGAACCCCCATTTCTTGGACACTCTATGGTCTGATTGCTTCACAGTTGGGTGATGTAGAAACTGAGATGGTGACAGTTGATGGGAATGTGAAGGTATCCACATTCATAAAATCATATTTTGGGATGAGACACGACTTTTTGGGAATTGTAGCACTGGTGCTTGTGTGTATCCCCGTTGCTTTTGCTTTGTTCTTTGCTCTGGCCATCAGACAACTCAACTTCCAAAAAAGATAG___AAATCGCCTCACATGCTCATTGGATATATGTTCTGTTATTTTCTTCAATATGGCTGCTTGATACTGGTTGACTCAAGTGTGTACAGGCAACCATATGCTTCAGTTGAAGTCATGAATTTGTGTTATTGAATACTATTCTTTAGGATTATGTTGGTATAATAATACCATCGTTTGGTTCTGAATTGTTATTAAG

Fln Alignment:

Contig1548___IHQPSIDIFEAFDELLLLKRGGQVIYAGPVGRHSHKLIEYFEAVSGVPQITEGYNPATWALEVSSMATEERLGVDFAEIYRKSALHEWNQALIKELSTPAPGSQDLNFPTQYAQSFNVQCTACLWKQHWSYWRNPHYNVVRFFFTTVVALLFGTIFWDLGTKRGKQQDLLNILGSMYCAVLFLGVSNSSSVQPIVEVERTVFYREKAAGMYSALPYALGQVAIEVPYVLMQCVIYAILVYSMIAFEWTAVKXXXXXXXXXXXXXXXXXXGMLTVAVTPNYHIGAIISSAFYSLWNLFCGFIIPRPKMPIWWRWYYWGTPISWTLYGLIASQLGDVETEMVTVDG---NVKVSTFIKSYFGMRHDFLGIVALVLVCIPVAFALFFALAIRQLNFQKR
D5ACV1_________________IHQPSIDIFEAFDELLLMKRGGQVIYAGPVGHHSYKLIEYFEAIPGVPKIRDGYNPATWMLEISSPAAETHLGVDFAEVYSNSPLFQRNQALIKELSTPVPGSRDLYFPTKYSQSFRVQCIACLWKQHWSYWRNPTYNVVRFFFTTVTALLFGSIFWGLGSKTYKQQDLFNVLGAMYASTIFLGVSNSSTVQPVVGVQRTVFYREKAAGMYSAIPYAVAQTAIEIPYILIQTTIYSLIVYSMIDFQWTTVKFFWFLFYMFMCFVYFTLYGMMAVALTPGHQIAAIVSSFFYGFWNIFSGFLITRPQIPVWWRWYYWANPVAWTLYGLITSQLGDL-TGFVEVAGEKDTMSVQQFLEGYFGYRHDFLGVVAAVHVGIVILFFSVFAFGIKYLNFQRR

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
612		66		33	1.0
726	85		14		0.993533
793			80	20	0.995493
935		83		16	0.994512
936		83	16		0.994512
937			16	83	0.994512
938			16	83	0.994512
1276		16		83	0.994512
1291		83		16	0.994512
1328		14		85	0.993533
1337	12			87	0.992554
1339			12	87	0.992554
1340	87		12		0.992554
1341			12	87	0.992554
1379	88			11	0.923564
1380	88		11		0.923564
1381			11	88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain