SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1241

Length: 1686 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene1241 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17528	1/57
SustainPine v2.0	sp_v2.0_unigene20872	3/57
SustainPine v2.0	sp_v2.0_unigene24729	10/57
SustainPine v2.0	sp_v2.0_unigene24767	30/57
SustainPine v2.0	sp_v2.0_unigene24782	9/57
SustainPine v2.0	sp_v2.0_unigene83904	1/57
SustainPine v2.0	sp_v2.0_unigene83950	2/57

Source	Descriptions	Term	Type	Identity
AutoFact	[O] COG5272 Ubiquitin	-	-	97%
FL-Next	sp=Polyubiquitin; Petroselinum crispum (Parsley) (Petroselinum hortense).	-	-	98%
Blast2go	ubiquitin	-	-	99%

Source	GOs	Term	Type	Identity
Blast2go	protein modification process	GO:0006464	Biological Process	99%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	99%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	99%
Blast2go	aging	GO:0007568	Biological Process	99%
Blast2go	intracellular part	GO:0044424	Cellular Component	99%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
968		12	87		0.992554
969	87	12			0.992554
970		12	87		0.992554
971	12	87			0.992554
974			14	85	0.993533
980	50	50			1.0
985	66		16		0.988813
986	16		83		0.994512
1052	80		20		0.995493
1458		33		66	1.0
1522		33		66	0.997452
1591	16			83	0.994512
1592	83			16	0.994512
1641		33		66	0.997452
1656	33			66	0.997452
1659	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain