SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1062

Length: 382 nt

UniGene Fasta

>biog2_v2.0_unigene1062
ACAATGGGGTGGGACCAACAGGCTAATGATATTCGATTAAATGTGTTTGGCATTTCTACATATCGTGTAAACCAGCGAGAGATAATAAATGCTGTTATGAGTGGAAGAGATGTTGTTGTAATAATGGCTGCAGGCGGTGGCAAGAGTCTTTGTTACCAGCTTCCTGCATTTCTTCGTCCTGGGACTGCTCTTGTTGTGAGCCCCTTACTTTCACTTATACAGGATCAGGTGATGGGACTTACTGCTCTAAATATTCCAGCAGGCATGTTGACATCTACAAGCTCAAAAGAGAATGAAAGTCAATCTACAAGGCTCCTGAAAAGGGTGAAGGAGAGCTTAAGGTTTGTATGTGACACCAGAGAAGATATCAAAGAGTAAGCGA

Ace file of the UniGene biog2_v2.0_unigene1062

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8046	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana] sp\|Q9FT73.1\|RQL2_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 2; AltName: Full=RecQ-like protein 2; Short=AtRecQ2; Short=AtRecQl2 emb\|CAC14866.1\| DNA Helicase [Arabidopsis thaliana] gb\|AE	-	-	3.99931e-42	67%
FL-Next	sp=ATP-dependent DNA helicase Q-like 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	65%
Blast2go	atp-dependent dna helicase q-like 2-like	-	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	DNA replication	GO:0006260	Biological Process	77%
Blast2go	DNA recombination	GO:0006310	Biological Process	77%
Blast2go	DNA repair	GO:0006281	Biological Process	77%
Blast2go	ATP-dependent 3'-5' DNA helicase activity	GO:0043140	Molecular Function	77%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	77%
Blast2go	protein binding	GO:0005515	Molecular Function	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%
Blast2go	four-way junction helicase activity	GO:0009378	Molecular Function	77%
Blast2go	intracellular	GO:0005622	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	GNAT domain	IPR000182	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Helicase/RNase D C-terminal, HRDC domain	IPR002121	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	DNA helicase, ATP-dependent, RecQ type	IPR004589	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018329	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FT73

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 509 aas, your sequence is shorter than subject: 126 - 705

Fln protein: TMGWDQQANDIRLNVFGISTYRVNQREIINAVMSGRDVVVIMAAGGGKSLCYQLPAFLRPGTALVVSPLLSLIQDQVMGLTALNIPAGMLTSTSSKENESQSTRLLKRVKESLRFVCDTREDIKE*

Protein Length: 127

Fln nts: ACAATGGGGTGGGACCAACAGGCTAATGATATTCGATTAAATGTGTTTGGCATTTCTACATATCGTGTAAACCAGCGAGAGATAATAAATGCTGTTATGAGTGGAAGAGATGTTGTTGTAATAATGGCTGCAGGCGGTGGCAAGAGTCTTTGTTACCAGCTTCCTGCATTTCTTCGTCCTGGGACTGCTCTTGTTGTGAGCCCCTTACTTTCACTTATACAGGATCAGGTGATGGGACTTACTGCTCTAAATATTCCAGCAGGCATGTTGACATCTACAAGCTCAAAAGAGAATGAAAGTCAATCTACAAGGCTCCTGAAAAGGGTGAAGGAGAGCTTAAGGTTTGTATGTGACACCAGAGAAGATATCAAAGAGTAAGCGA

Fln Alignment:

Contig1062___TMGWDQQANDIRLNVFGISTYRVNQREIINAVMSGRDVVVIMAAGGGKSLCYQLPAFLRPGTALVVSPLLSLIQDQVMGLTALNIPAGMLTSTSSKENESQSTRLLKRVKESLRFVCDTREDIKE
Q9FT73_________________TFEWDSRADDVRFNVFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGTTLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEKVSK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain