SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene998

Length: 298 nt

UniGene Fasta

>biog2_v2.0_unigene998
GACTGCAGTTAGAACTCACTTGCACATAAAGCAAGATTCATCATCCATTTTAGGTGGTGTTATTGCATGCCAAAAGAATGACACTATTGAAGACATCATACTGAAGTTGGATAACACAAAGATACAAAGAATCTATGTTGTTAATGGCGAGGGTGATCTAGAGGGTGTTGTAACACTGCGTGATATTATATCTAAGTTTGTTCAGGAACCTCCTGGATATTTTGGAGACTTTTTCTATGGTGTGGTTCCTTCACCTGAGAACAGCAGGGTCTGAGAGTTCTGTTTGTGTAATCCAATG

Ace file of the UniGene biog2_v2.0_unigene998

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26704	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	AMP-activated protein kinase, gamma regulatory subunit, putative n=1 Tax=Ricinus communis RepID=B9RAG9_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	snf1-related protein kinase regulatory subunit gamma-1-like	-	-	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	TPP-binding enzyme, conserved site	IPR000399	-	0.0	-
Sma3	Cystathionine beta-synthase, core	IPR000644	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9R1

Fln msg: your sequence is shorter than subject: 91 - 439

Fln protein: TAVRTHLHIKQDSSSILGGVIACQKNDTIEDIILKLDNTKIQRIYVVNGEGDLEGVVTLRDIISKFVQEPPGYFGDFFYGVVPSPENSRV*

Protein Length: 92

Fln nts: GACTGCAGTTAGAACTCACTTGCACATAAAGCAAGATTCATCATCCATTTTAGGTGGTGTTATTGCATGCCAAAAGAATGACACTATTGAAGACATCATACTGAAGTTGGATAACACAAAGATACAAAGAATCTATGTTGTTAATGGCGAGGGTGATCTAGAGGGTGTTGTAACACTGCGTGATATTATATCTAAGTTTGTTCAGGAACCTCCTGGATATTTTGGAGACTTTTTCTATGGTGTGGTTCCTTCACCTGAGAACAGCAGGGTCTGA___GAGTTCTGTTTGTGTAATCCAATG

Fln Alignment:

Contig998___IKQDSSSILGGVIACQKNDTIEDIILKLDNTKIQRIYVVNGEGDLEGVVTLRDIISKFVQEPPGYFGDFF
D5A9R1________________IVSTGSSVMMPPVTCKYDTRLADLIEVLAEKCIHRIYLVNGQDELLGVITLRDVISCFVSEPENHFENYF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
163	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain