SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene990

Length: 449 nt

UniGene Fasta

>biog2_v2.0_unigene990
AAGGCAGGAAGTTCTTCAGACAAAGACTTTGGTAAACAGTTTGTTTACAAGCACTTTGGAAGTATGGCATCTGTGGGACGCTACAAAGCATTAGTTGACCTTCGCCAGAGCAAGGAGGCAAAAGGTGTATCAATGGCAGGTTTCATAAGCTGGATAATGTGGCGGTCAGCTTATCTAACACGTGTGCTGAGTTGGAGGAATAGGTTTTATGTGGCAGTGAACTGGGCTACAACGTTTGTGTTTGGTCGTGACATTACGCGTATCTAGTCCTTCAAGTGGGTTTCTGAGATTGTTGTAGAACTGCAGAGGTTTTCTGGCGAAGGCAATATTTTCTTCATTATTTATGCTTATTGTTCATTATTTTTCACCTCCAACTTAGGGTTGGAATTTTCCACATTATAGGGACGCAGTCAGTTATATTCTGTAAAAGTTTTATAAGTACTCTTTAG

Ace file of the UniGene biog2_v2.0_unigene990

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1360	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	NADH dehydrogenase [Arabidopsis thaliana] gb\|AAC31853.1\| putative NADH dehydrogenase (ubiquinone oxidoreductase) [Arabidopsis thaliana] gb\|AEC08332.1\| NADH dehydrogenase [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	79%
Blast2go	probable nadh dehydrogenase-like	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Oxidative phosphorylation	00190		0.0	84%
Blast2go	Metabolic pathways	01100		0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	84%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	84%
Blast2go	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	84%
Blast2go	intrinsic to mitochondrial inner membrane	GO:0031304	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9H238

Fln msg: your sequence is shorter than subject: 89 - 451

Fln protein: KAGSSSDKDFGKQFVYKHFGSMASVGRYKALVDLRQSKEAKGVSMAGFISWIMWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDITRI*

Protein Length: 90

Fln nts: AAGGCAGGAAGTTCTTCAGACAAAGACTTTGGTAAACAGTTTGTTTACAAGCACTTTGGAAGTATGGCATCTGTGGGACGCTACAAAGCATTAGTTGACCTTCGCCAGAGCAAGGAGGCAAAAGGTGTATCAATGGCAGGTTTCATAAGCTGGATAATGTGGCGGTCAGCTTATCTAACACGTGTGCTGAGTTGGAGGAATAGGTTTTATGTGGCAGTGAACTGGGCTACAACGTTTGTGTTTGGTCGTGACATTACGCGTATCTAG___TCCTTCAAGTGGGTTTCTGAGATTGTTGTAGAACTGCAGAGGTTTTCTGGCGAAGGCAATATTTTCTTCATTATTTATGCTTATTGTTCATTATTTTTCACCTCCAACTTAGGGTTGGAATTTTCCACATTATAGGGACGCAGTCAGTTATATTCTGTAAAAGTTTTATAAGTACTCTTTAG

Fln Alignment:

Contig990___KAGSSSDKDFGKQFVYKHFGSMASVGRYKALVDLRQSKEAKGVSMAGFISWIMWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDITRI
B9H238________________KAFSAKDIPLGDPFVYKHLGSMASVGRYKALVDLRQSKDAKGVSLAGFVSWLIWRSAYLTRVISWRNRFYVAVNWATTLVFGRDNSRI

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
176			16	83	0.994512
177	83		16		0.994512
178	83		16		0.994512
237		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain