SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene958

Length: 540 nt

UniGene Fasta

>biog2_v2.0_unigene958
ATGGGGGAAATAACAATCACATATTCTGCTGGTCTTGCCAAAACCATTACTGCGCTTTGTGTCGTAAAGTTGTGCGACGCAGCTCTGAACATTACGGACCACGAGGGTGTAAACAGCATACGGCAGATTGACAAGTATAAATATAGTCCTGTGTGAAGAAGTAAAGTCTTTCACTTGTCAATTTTGGCTTTTCAGGCACAGGGGCATCCATATATTTGTCTTGTTAGGCTATGGCATTGGTCTTCCTGGCATTCTCTCATTGCCTAGAGGAATCGTGGCATTTTTCAAGTGATCTCCAGAAATTTAAATGTTGGTCATTGGAGCCACCATGCTCTCTGCTGGAAAGCTCAATGTTTCAATAAAATGAGTGGTCTGTCAGAAGTCAAGAGTTACTGCCATTCTGTTTGCTATTATGCCCATTCTTTCCGATTTTTACATATATCATCCTTTCTGCCTATATTTTCAATTTGAATGAGAATAATGATTTTGTAGCAGTCGGTCATGCTATTCATCTCAAGATATCTTTCTTCCTAGCAAAAG

Ace file of the UniGene biog2_v2.0_unigene958

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8250	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	ubiquitin-protein ligase RNF14 [Arabidopsis thaliana] gb\|AAF81330.1\|AC007767_10 Contains similarity to ring finger protein 14 from Homo sapiens gb\|NM_004290. It contains an IBR domain PF\|01485 [Arabidopsis thaliana] gb\|AAG60174.1\|AC084110_7 hypothetical p	-	-	51%
FL-Next	tr=OSIGBa0142I02-OSIGBa0101B20.23 protein; Oryza sativa (Rice).	-	-	85%
Blast2go	ring finger	-	-	64%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, B-box	IPR000315	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, C6HC-type	IPR002867	-	-
Sma3	RWD domain	IPR006575	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: Q7F9L6

Fln msg: your sequence is shorter than subject: 43 - 547

Fln protein: GGNNNHIFCWSCQNHYCALCRKVVRRSSEHYGPRGCKQHTAD*

Protein Length: 44

Fln nts: ATGGGGGAAATAACAATCACATATTCTGCTGGTCTTGCCAAAACCATTACTGCGCTTTGTGTCGTAAAGTTGTGCGACGCAGCTCTGAACATTACGGACCACGAGGGTGTAAACAGCATACGGCAGATTGA___CAAGTATAAATATAGTCCTGTGTGAAGAAGTAAAGTCTTTCACTTGTCAATTTTGGCTTTTCAGGCACAGGGGCATCCATATATTTGTCTTGTTAGGCTATGGCATTGGTCTTCCTGGCATTCTCTCATTGCCTAGAGGAATCGTGGCATTTTTCAAGTGATCTCCAGAAATTTAAATGTTGGTCATTGGAGCCACCATGCTCTCTGCTGGAAAGCTCAATGTTTCAATAAAATGAGTGGTCTGTCAGAAGTCAAGAGTTACTGCCATTCTGTTTGCTATTATGCCCATTCTTTCCGATTTTTACATATATCATCCTTTCTGCCTATATTTTCAATTTGAATGAGAATAATGATTTTGTAGCAGTCGGTCATGCTATTCATCTCAAGATATCTTTCTTCCTAGCAAAAG

Fln Alignment:

Contig958___GNNNHIFCWSCQNHYCALCRKVVRRSSEHYGPRGCKQHTAD
Q7F9L6________________GNNNHIFCWACQVHYCALCRMVVRKSSEHYGPRGCKQHSVD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain