SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene944

Length: 481 nt

UniGene Fasta

>biog2_v2.0_unigene944
AGGTTCCATGACTTGGTTGCATCTGGAGAAGCTGTTAACAGCAAAGACTACACAGCTCCCACCCCATCTTGGGCTGTTTATGGAGCTAAGGAAGGTGGTTTTGATCCAGAGCAAGCACGATTTAAGAAGGAGAGAAGGCATGGAGCTCGCACGAGTATCCCTCCAATTCGGACATAGTATAAAGTGCTGAGGTGCATATTGAGTTAGTCTAGGGTCTACAACCCTTGAAAGCGGCTTTCTACCAGGACTCTATTGCATATCTGAAGAGTGTGTGTATACTATTTGCGAGTGCTGTGAAGCATATACGACTGCCTTCAAATGACAGAATGTCATGAGCTGTAACTTATTGAATCGATATATTCCAGGATTAGGTTGATTCAGATTTCTCAGAAACAGGTGCTATCAACATATTATTTGTTACCTGGAAGAGAAAACATGGTATTGTTACATTGTGCCATACAGTTTGAACCGTGGAGATGGA

Ace file of the UniGene biog2_v2.0_unigene944

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9122	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=tRNA wybutosine-synthesizing protein 1 homolog gb\|AAN65027.1\| putative oxidoreductase [Oryza sativa Japonica Group] gb\|ABF99122.1\| radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed [Oryza sativa Japonica	-	-	74%
FL-Next	Isoform 2 of tRNA wybutosine-synthesizing protein 1 homolog OS=Oryza sativa subsp. japonica GN=TYW1	-	-	73%
Blast2go	trna wybutosine-synthesizing protein 1 homolog	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	NADPH--hemoprotein reductase.	EC:1.6.2.4	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	85%
Blast2go	iron ion binding	GO:0005506	Molecular Function	85%
Blast2go	NADPH-hemoprotein reductase activity	GO:0003958	Molecular Function	85%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	85%
Blast2go	iron-sulfur cluster binding	GO:0051536	Molecular Function	85%
Blast2go	FMN binding	GO:0010181	Molecular Function	85%
Blast2go	plastid	GO:0009536	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Flavodoxin	IPR001094	-	-
Sma3	Flavodoxin, conserved site	IPR001226	-	-
Sma3	Domain of unknown function DUF21	IPR002550	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	-
Sma3	tRNA wybutosine-synthesis	IPR013917	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8H8N3-2

Fln msg: your sequence is shorter than subject: 59 - 600

Fln protein: RFHDLVASGEAVNSKDYTAPTPSWAVYGAKEGGFDPEQARFKKERRHGARTSIPPIRT*

Protein Length: 60

Fln nts: AGGTTCCATGACTTGGTTGCATCTGGAGAAGCTGTTAACAGCAAAGACTACACAGCTCCCACCCCATCTTGGGCTGTTTATGGAGCTAAGGAAGGTGGTTTTGATCCAGAGCAAGCACGATTTAAGAAGGAGAGAAGGCATGGAGCTCGCACGAGTATCCCTCCAATTCGGACATAG___TATAAAGTGCTGAGGTGCATATTGAGTTAGTCTAGGGTCTACAACCCTTGAAAGCGGCTTTCTACCAGGACTCTATTGCATATCTGAAGAGTGTGTGTATACTATTTGCGAGTGCTGTGAAGCATATACGACTGCCTTCAAATGACAGAATGTCATGAGCTGTAACTTATTGAATCGATATATTCCAGGATTAGGTTGATTCAGATTTCTCAGAAACAGGTGCTATCAACATATTATTTGTTACCTGGAAGAGAAAACATGGTATTGTTACATTGTGCCATACAGTTTGAACCGTGGAGATGGA

Fln Alignment:

Contig944___RFHDLVASGEAVNSKDYTAPTPSWAVYGAKEGGFDPEQARFKKERRHGA
Q8H8N3-2______________RFHELVTSGKPFRSQDYMALTPSWAVYGAEEGGFDPDQSRYKKERRHGA

SNPs (tot: 3)

Position	A %	G %	T %	Probability
254	25		75	0.996473
258	75	25		0.996473
259		25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain