SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene823

Length: 503 nt

UniGene Fasta

>biog2_v2.0_unigene823
CGTCTGTTGGAGATTCCAGATGCATATTGGATTCGCAGGGTGGTGTGGTCTCATTACTCACAGTTGATCACAGGCTAGAAGAAAATGCTGAAGAGAGGGAACGCGTAACAGCAAGTGGAGGTGAAGTGGGAAGGCTCAGTATTGTGGGTGGTGCTGAGGTTGGTCCTTTACGATGTTGGCCTGGTGGTCTGTGCCTTTCCAGATCAATTGGGGACATGGATGTTGGTGAATTCATTGTACCGATACCTTATGTTAAACAGATTAAGCTCTCAAATGCTGGAGGTAGGCTAATAATTGCCTCTGATGGTGTGTGGGATGCACTATCCTCTGAAAAATCTGCAAAAGCCTGCAGAGGACTGCCAGCTGAACTTGCTGCAAGACAAGTTGTAAAGGAGGCTTTAAGGACAAGGGGCTTGAAGGATGACACAACTTGTATTGTAGTTGATATTATTCCACCTGAACACTCTGCTCCTATTTCATTGCCTCCTAAGAAGCAAAATAAG

Ace file of the UniGene biog2_v2.0_unigene823

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2175	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	putative protein phosphatase 2C 15 [Arabidopsis thaliana] ref\|NP_001031252.1\| putative protein phosphatase 2C 15 [Arabidopsis thaliana] sp\|Q9M9C6.1\|P2C15_ARATH RecName: Full=Probable protein phosphatase 2C 15; Short=AtPP2C15 gb\|AAF26041.1\|AC015986_4 putat	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	protein phosphatase 2c 15	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	85%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	85%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLF8

Fln msg: Distance to subject end: 111 aas, your sequence is shorter than subject: 167 - 436

Fln protein: SVGDSRCILDSQGGVVSLLTVDHRLEENAEERERVTASGGEVGRLSIVGGAEVGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQIKLSNAGGRLIIASDGVWDALSSEKSAKACRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIIPPEHSAPISLPPKKQNK

Protein Length: 168

Fln nts: CGTCTGTTGGAGATTCCAGATGCATATTGGATTCGCAGGGTGGTGTGGTCTCATTACTCACAGTTGATCACAGGCTAGAAGAAAATGCTGAAGAGAGGGAACGCGTAACAGCAAGTGGAGGTGAAGTGGGAAGGCTCAGTATTGTGGGTGGTGCTGAGGTTGGTCCTTTACGATGTTGGCCTGGTGGTCTGTGCCTTTCCAGATCAATTGGGGACATGGATGTTGGTGAATTCATTGTACCGATACCTTATGTTAAACAGATTAAGCTCTCAAATGCTGGAGGTAGGCTAATAATTGCCTCTGATGGTGTGTGGGATGCACTATCCTCTGAAAAATCTGCAAAAGCCTGCAGAGGACTGCCAGCTGAACTTGCTGCAAGACAAGTTGTAAAGGAGGCTTTAAGGACAAGGGGCTTGAAGGATGACACAACTTGTATTGTAGTTGATATTATTCCACCTGAACACTCTGCTCCTATTTCATTGCCTCCTAAGAAGCAAAATAAG

Fln Alignment:

Contig823___SVGDSRCILDSQGGVVSLLTVDHRLEENAEERERVTASGGEVGRLSIVGGAEVGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQIKLSNAGGRLIIASDGVWDALSSEKSAKACRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIIPPEHSAPISLPPKKQNK
B8LLF8________________SVGDSRCILESPGGLVSLLSADHRLEANLEERERIMASGGEIGRLNTVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPHVKQVKLSNAGGRLIIATDGVWDALSSEKAANCCRGLPAELAAKQIVKEALRIRGLRDDTTCIVVDLIPPEKSAP-PAPVKKQSK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain