SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene766

Length: 456 nt

UniGene Fasta

>biog2_v2.0_unigene766
AGGCCATGATGGAGACTTCGGAGAGTCTGGAAGATCTGAAGGATTGACAGATAGCCCTGGAAGTGCTGGGAGAACTTCCAGAACTTCTGTCGACCGTGAGCGAGCAGTTGCTGAAGCTAAAATGTGGGGTGAGAATTGGAGAGAAAAGAAGAGAGGAAATGCGCATGATGGTATTGATGGTTTTCAATGATGCCTTGGCTGTGGTAAATAAATTATTACCATTTTACTGTAAAAATTTCATTTGATCAGGAGTACTCGAGGTTCCTTTGTATTCCATGCATACTAGAAAACAAGATCATTTTGTAGGTTGGGAAGAAGTTAGAGGTTCCTTTGTATTCCATGCATACTAGAAACAAGATCATTTTGTAGGTTGGGAAGAAGTTAGAGGTTCCTTCGTATTCCATGCATATTAGAAAACAAGATCATTTTGTAGGTTGGGAAGAAATTAGAGATTGC

Ace file of the UniGene biog2_v2.0_unigene766

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3336	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor serine-threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9RT11_RICCO	-	-	67%
FL-Next	tr=Receptor serine-threonine protein kinase, putative; Ricinus communis (Castor bean).	-	-	55%
Blast2go	protein kinase family protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	75%
Blast2go	ATP binding	GO:0005524	Molecular Function	75%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9RT11

Fln msg: your sequence is shorter than subject: 63 - 516

Fln protein: GHDGDFGESGRSEGLTDSPGSAGRTSRTSVDRERAVAEAKMWGENWREKKRGNAHDGIDGFQ*

Protein Length: 64

Fln nts: AGGCCATGATGGAGACTTCGGAGAGTCTGGAAGATCTGAAGGATTGACAGATAGCCCTGGAAGTGCTGGGAGAACTTCCAGAACTTCTGTCGACCGTGAGCGAGCAGTTGCTGAAGCTAAAATGTGGGGTGAGAATTGGAGAGAAAAGAAGAGAGGAAATGCGCATGATGGTATTGATGGTTTTCAATGA___TGCCTTGGCTGTGGTAAATAAATTATTACCATTTTACTGTAAAAATTTCATTTGATCAGGAGTACTCGAGGTTCCTTTGTATTCCATGCATACTAGAAAACAAGATCATTTTGTAGGTTGGGAAGAAGTTAGAGGTTCCTTTGTATTCCATGCATACTAGAAACAAGATCATTTTGTAGGTTGGGAAGAAGTTAGAGGTTCCTTCGTATTCCATGCATATTAGAAAACAAGATCATTTTGTAGGTTGGGAAGAAATTAGAGATTGC

Fln Alignment:

Contig766___GESGRSEGLTDSP------GSAGRTSRT-------SVDRERAVAEAKMWGENWREKKRGNAHDGIDG
B9RT11________________GGSGRKWGLDDSERQDSQRGSPVNTSRVRETPRNRDLDRERAVAEAKVWGENWREKKRANAMGSFDG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
250	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain