SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene669

Length: 385 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene669
AACCACACAATAGTGGCGATTTTTCAATGGCAGTTGTGCAGGCCAATTCTAATTTGGAGGACCAGGGGCAGGTTCAGAGTAGCCACTTTGGGACTTATATTGGGGTTTATGATGGCCATGGAGGTCCTGAGGCATCCAGATTCATCAATAACCATCTGTTCCCTCACATGGAAAGATTTGCCTCGGAGCAAGGGGGAATGTCTGCCGAAGTTCTTCAGAAAGCATTCAGTACAATAGAAGAAGAATTTTTGCATGTTGTCAAGAGGACTTGGCCAACACAGCCACATATTGCTTCTGTGGGATCTTGTTGTCTTGTAGGAGCCATATCCAATAATATGTTATATCTTGCAAATCTTGGTGATTCAAGAGCTGTTTTGGGCAGTTT

Ace file of the UniGene biog2_v2.0_unigene669 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4287	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative protein phosphatase 2C 63 [Arabidopsis thaliana] sp\|O81760.1\|P2C63_ARATH RecName: Full=Probable protein phosphatase 2C 63; Short=AtPP2C63 gb\|AAK50092.1\|AF372953_1 AT4g33920/F17I5_110 [Arabidopsis thaliana] emb\|CAA19874.1\| putative protein [Arabid	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	probable protein phosphatase 2c 63-like	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	79%
Blast2go	metal ion binding	GO:0046872	Molecular Function	79%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	79%
Blast2go	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA04

Fln msg: Distance to subject end: 201 aas, your sequence is shorter than subject: 127 - 370

Fln protein: PHNSGDFSMAVVQANSNLEDQGQVQSSHFGTYIGVYDGHGGPEASRFINNHLFPHMERFASEQGGMSAEVLQKAFSTIEEEFLHVVKRTWPTQPHIASVGSCCLVGAISNNMLYLANLGDSRAVLGS

Protein Length: 128

Fln nts: AACCACACAATAGTGGCGATTTTTCAATGGCAGTTGTGCAGGCCAATTCTAATTTGGAGGACCAGGGGCAGGTTCAGAGTAGCCACTTTGGGACTTATATTGGGGTTTATGATGGCCATGGAGGTCCTGAGGCATCCAGATTCATCAATAACCATCTGTTCCCTCACATGGAAAGATTTGCCTCGGAGCAAGGGGGAATGTCTGCCGAAGTTCTTCAGAAAGCATTCAGTACAATAGAAGAAGAATTTTTGCATGTTGTCAAGAGGACTTGGCCAACACAGCCACATATTGCTTCTGTGGGATCTTGTTGTCTTGTAGGAGCCATATCCAATAATATGTTATATCTTGCAAATCTTGGTGATTCAAGAGCTGTTTTGGGCAGTTT

Fln Alignment:

Contig669___HNSGDFSMAVVQANSNLEDQGQVQSSHFGTYIGVYDGHGGPEASRFINNHLFPHMERFASEQGGMSAEVLQKAFSTIEEEFLHVVKRTWPTQPHIASVGSCCLVGAISNNMLYLANLGDSRAVLG
D5AA04________________HVAGEFSMAVAQANQLVEDQCQVEIGPFGTFVGVYDGHGGPDAARFINDHLFRHFQNFALEQRGMSAEVIRNAFLATEEGFLSLVTNAWPTKPQLAAVGSCCLVGLVYEKTLYVANLGDSRVVMG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
126	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain