SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene656

Length: 429 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene656
GTCTGAATCTCAAGAAGCAGCACATGCAGTTGTGCAAGCTGGTACAGCAGATGCAGTTGTGCAAGCTGGTATAGCCGTAGTAGCGAATGGAAGTCCTAGACAAGAAAGTAAAAGCTGCAGTCCAGGACACTTGTTAGAAGCAGCAGCAGCAAATGCTGGAGACATTGCCACAGAAGCAGCAACAGAACATGCTGGTGACATTGCCACAGATCAAGCACATGGACATGATGAAAGTAAGAAGAATAAAGAGATCAGAATGATGAGGGCTTTCAGATCGGAGCTTGCAGAGTTTGTAAAGGAGGTGACTAAAACCTACATGGCGAGAAGGTCAGATGAGTAAGGAGGCTTTCAAAACAATTGTCAAAAAGTTGTCGATAAGGTTGCAGGTTCATTACAGAGCCATCAAATACCAAAGACGCAAGAGAAAAT

Ace file of the UniGene biog2_v2.0_unigene656 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2507	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SRI domain containing protein	-	-	2.0e-05	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	zinc finger ccch domain-containing protein	-	-	0.0	57%

Source	GOs	Term	Type	Identity
Blast2go	RNA metabolic process	GO:0016070	Biological Process	57%
Blast2go	gene expression	GO:0010467	Biological Process	57%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	57%
Blast2go	metal ion binding	GO:0046872	Molecular Function	57%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXI7

Fln msg: Distance to subject end: 25 aas, your sequence is shorter than subject: 142 - 488

Fln protein: SESQEAAHAVVQAGTADAVVQAGIAVVANGSPRQESKSCSPGHLLEAAAANAGDIATEAATEHAGDIATDQAHGHDESKKNKEIRMMRAFRSELAEFVKEVTKTYMARRSDE*GGFQNNCQKVVDKVAGSLQSHQIPKTQEK

Protein Length: 143

Fln nts: GTCTGAATCTCAAGAAGCAGCACATGCAGTTGTGCAAGCTGGTACAGCAGATGCAGTTGTGCAAGCTGGTATAGCCGTAGTAGCGAATGGAAGTCCTAGACAAGAAAGTAAAAGCTGCAGTCCAGGACACTTGTTAGAAGCAGCAGCAGCAAATGCTGGAGACATTGCCACAGAAGCAGCAACAGAACATGCTGGTGACATTGCCACAGATCAAGCACATGGACATGATGAAAGTAAGAAGAATAAAGAGATCAGAATGATGAGGGCTTTCAGATCGGAGCTTGCAGAGTTTGTAAAGGAGGTGACTAAAACCTACATGGCGAGAAGGTCAGATGAGTAAGGAGGCTTTCAAAACAATTGTCAAAAAGTTGTCGATAAGGTTGCAGGTTCATTACAGAGCCATCAAATACCAAAGACGCAAGAGAAAAT

Fln Alignment:

Contig656___EAAHAVVQAGTADAVVQAGIAVVANGSPR-QESKSCSPGHLLEAAAANAGDIATEAATEHAGDIATDQAHGHDESKKNKEIRMMRAFRSELAEFVKEVTKTYMARRSDE*GGFQNNCQKVVDKVAGSLQSHQIPKTQ
A9NXI7________________EAENGVVAAMDAEG------GAVENGSPGLEEGKNWSPDHPLEAAIGGVGEIEI------------DQVQVTSKSKKNKDSRSMKLFRQALAEFVKEALKPSWREGHMSKEAFKTIVKKAVDKVAGAMQNHQIPKSR

SSRs (tot: 1)

Start position	End position	Sequence	Length
279	291	TGC TGC TGC TGC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain