SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene639

Length: 409 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene639
AATGATTGGCCGGAACCCTCAAAGAGATGGTATGCACTCATGGTCCTTATGCTGCCCTCTGATAGTGCTCGCAGATGGCATGTTCATGAGTTAGAGCTTGTGGAGGTTGTTGCAGATCAGGTAGCGGTGGCTCTCTCACATGCGGCAATTTTGGAAGAATCAATGAGAGCACGAGACCTGCTCATGGAGCAAAATGTTGCACTTGAGATAGCTCGACAGGAGGCAGAAACAGCTATTCGCGCTCGCAATGATTTCTTAGCAGTTATGAACCATGAGATGCGTACTCCGATGCATGCAATTATTGCTTTGTCATCGCTTCTTCAGGAGACAGAGTTGACTCCTGAACAACGATCCATGGTTGAGACCATCTTAAGGAGTAGTAATCTTCTTGCAACACTCATCAATGATG

Ace file of the UniGene biog2_v2.0_unigene639 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene680	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Ethylene receptor ETR1 n=2 Tax=core eudicotyledons RepID=B3FIA9_ACTDE	-	-	73%
FL-Next	sp=Ethylene receptor; Passiflora edulis (Passion fruit).	-	-	91%
Blast2go	ethylene receptor	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	peptidyl-histidine phosphorylation	GO:0018106	Biological Process	86%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	86%
Blast2go	ethylene mediated signaling pathway	GO:0009873	Biological Process	86%
Blast2go	two-component response regulator activity	GO:0000156	Molecular Function	86%
Blast2go	metal ion binding	GO:0046872	Molecular Function	86%
Blast2go	receptor activity	GO:0004872	Molecular Function	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	86%
Blast2go	two-component sensor activity	GO:0000155	Molecular Function	86%
Blast2go	integral to membrane	GO:0016021	Cellular Component	86%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZWL6

Fln msg: Distance to subject end: 340 aas, your sequence is shorter than subject: 136 - 738

Fln protein: NDWPEPSKRWYALMVLMLPSDSARRWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMEQNVALEIARQEAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRSMVETILRSSNLLATLIND

Protein Length: 137

Fln nts: AATGATTGGCCGGAACCCTCAAAGAGATGGTATGCACTCATGGTCCTTATGCTGCCCTCTGATAGTGCTCGCAGATGGCATGTTCATGAGTTAGAGCTTGTGGAGGTTGTTGCAGATCAGGTAGCGGTGGCTCTCTCACATGCGGCAATTTTGGAAGAATCAATGAGAGCACGAGACCTGCTCATGGAGCAAAATGTTGCACTTGAGATAGCTCGACAGGAGGCAGAAACAGCTATTCGCGCTCGCAATGATTTCTTAGCAGTTATGAACCATGAGATGCGTACTCCGATGCATGCAATTATTGCTTTGTCATCGCTTCTTCAGGAGACAGAGTTGACTCCTGAACAACGATCCATGGTTGAGACCATCTTAAGGAGTAGTAATCTTCTTGCAACACTCATCAATGATG

Fln Alignment:

Contig639___NDWPEPSKRWYALMVLMLPSDSARRWXXXXXXXXXXVADQVAVALSHAAILEESMRARDLLMEQNVALEIARQEAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRSMVETILRSSNLLATLIND
Q9ZWL6________________NDWPELSTRRYALMVLMLPSDSARQWRVHELELVEVVADQVAVALSHAAILEESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAVIALSSLLQETELTPEQRLMVETILKSSNLLATLIND

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain