SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene610

Length: 808 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene610

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16404	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	2-hydroxyacid dehydrongenase (Fragment) n=5 Tax=Pseudotsuga RepID=C6F725_PSEMZ	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	2-hydroxyacid dehydrongenase	-	-	76%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUE2

Fln msg: Overlapping hits, possible frame ERROR between 206 and 146, and overlapping frame ERROR between 658 and 658, Distance to subject end: 77 aas, your sequence is shorter than subject: 247 - 324

Fln protein: MDWYEENNKAAHGQAQPTVPRAGALxxxxxxxxxxxxxxxxxxxxxxVRVSSCPLEGAPQSLTLRHHHRTVGVALEINGTRIPPAESVSLTLRRDRVDKESAEATYVSTDSVRTTGTLDFEVCYDEETLLLCGALDRLEQGSDHSGVKELWSMDCCSAIGPGGCPFGKLSKQQQDFSPGLPSLEVYVAGCCGGSPxxxTKTVQLVSRRKPQRRATLDVIPEDEDETEKSQIKTIVLSGTIHVHIGFR

Protein Length: 248

Fln nts: GAGATCTGCGAGAGAATGTTTGCAGCGTGAGGACTGGATTCAGTCATTCGCATGAGGGTTATCAGGGC_-_ATGGACTGGTACGAGGAGAATAACAAGGCCGCCCATGGCCAGGCTCAGCCCACGGTTCCAAGGGCTGGTGCGCTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTCCGGGTGAGCTCGTGCCCTCTGGAAGGAGCACCGCAATCGCTGACCTTGCGGCACCACCATAGGACCGTGGGTGTCGCGCTGGAGATTAATGGAACCAGGATCCCGCCAGCGGAGTCTGTGTCCCTGACCCTACGCAGGGACAGGGTCGACAAGGAATCGGCCGAGGCTACTTATGTGAGCACGGACAGCGTTCGAACCACTGGGACTTTAGATTTCGAGGTCTGTTATGATGAAGAAACCCTGCTACTCTGCGGCGCTCTGGATAGGCTAGAACAGGGGTCTGACCATTCGGGGGTTAAGGAATTATGGAGCATGGATTGCTGCTCGGCCATAGGACCGGGTGGTTGCCCTTTTGGCAAATTGAGTAAGCAGCAGCAGGATTTCTCACCGGGGCTTCCCTCTCTGGAGGTTTATGTGGCAGGATGCTGTGGTGGCTCGCCAGTxxxxxxCACAAAGACCGTGCAGCTCGTGTCGCGGCGGAAACCGCAGAGGCGGGCGACTCTCGATGTTATTCCCGAGGATGAGGATGAGACGGAGAAATCACAGATTAAGACCATCGTGCTGAGTGGCACCATTCACGTTCACATCGGATTCAGAG

Fln Alignment:

Contig610___MDWYEENNKAAHGQAQPTVPRAGXXXxxxxxxxxxxxxxxxxxxxxYVRVSSCPLEGAPQSLTLRHHHRTVGVALEINGTRIPPAESVSLTLRRDRVDKESAEATYVSTDSVRTTGTLDFEVCYDEETLLLCGALDRLEQGSDHSGVKELWSMDCCSAIGPGGCPFGKLSKQQQDFSPGLPSLEVYVAGCCGGSPVILTKTVQLVSRRKPQRRATLDVIPEDEDETEKSQIKTIVLSG
A9NUE2________________MDWYEEMNKGAHSQGQPTVPRAGALLxxxxxxxxxxxxxxxxxxxxYVRVSSCPLEGAPQSLTLRHHHRTVGVALEINGTRIPPAESVSLTLRRDRVDKESAEATYVSTDSVRTTGTLDFEVCYDEETLLLCGALERLEQGSDHQGVKELWGMDCCSAIGPGVCPFGKLGKQQQDFSSGPPTLEVYVAGCCGGSPIILTKTVQLVSRRKPHRRGTLDVIPEDEDETEKAQIKTIVLSG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
272	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain