SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene542

Length: 1204 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene542

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10855	16/16

Source	Descriptions	Term	Type	Identity
AutoFact	ovule receptor-like kinase 28 [Solanum chacoense]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	protein strubbelig-receptor family 8-like	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	75%
Blast2go	ATP binding	GO:0005524	Molecular Function	75%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	75%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	75%
Blast2go	integral to membrane	GO:0016021	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMF2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 366 aas, your sequence is shorter than subject: 289 - 754

Fln protein: MGKKILQCLRLIIAILTATITISHGTTDPDDVSALKGIYSSLNSPQQLSGWSANGGDPCGQSWKGVSCSGSSVTSIKLSGLGLSGSLYYQLSDLSSLTTLDLSNNNIQGNIPYALPQKLQELNLASNGLSGTIPYSISNMTGLTDLKLSHNQLSGQIQDIFGQLSSLSTLDLSFNTLTQNLPQSFSSLSSLSVLYLQNNQLTGSVNVLANLPLTDLNIENNRFSGWVPNPWRSNQNFKYSSGNSFATGPAPPPPPYTPPPPSNNRPPKSSNVVLHQVAQRVGTAIRNL*

Protein Length: 290

Fln nts: GTGCAGGAAATGAAGATTTGAGTTCTCCGGAAACACATTAAGGATATCGTAGCTCTTTGAAC_-_ATGGGAAAGAAAATTTTGCAATGTTTGCGGTTAATTATTGCTATATTGACGGCGACTATTACGATATCGCACGGAACTACGGATCCAGACGACGTTTCTGCGCTCAAAGGCATATATAGCAGTCTAAATTCTCCCCAGCAACTTTCTGGATGGAGTGCAAATGGAGGAGATCCATGTGGTCAGTCCTGGAAAGGGGTTTCATGTTCTGGATCATCAGTTACATCAATCAAGCTCTCAGGCTTAGGATTGTCAGGATCATTGTATTACCAACTTTCAGACCTTTCATCATTGACAACCTTGGATTTGAGCAACAACAACATTCAGGGCAACATTCCTTATGCACTTCCACAGAAACTCCAGGAGTTAAACCTTGCTAGCAATGGCCTCAGTGGTACTATACCGTATTCAATTTCGAACATGACTGGCCTCACAGATTTGAAGTTGAGTCACAATCAACTTTCAGGTCAGATCCAAGATATATTTGGACAGCTTTCCAGCCTCTCTACTCTGGATCTATCCTTCAATACTTTGACTCAAAATCTGCCGCAGAGTTTCAGCTCATTGTCGAGTCTCAGTGTGCTATATTTGCAAAATAATCAGCTTACTGGTTCTGTTAATGTTCTTGCCAATCTGCCACTCACAGATTTGAATATTGAAAATAACCGTTTTAGTGGTTGGGTACCCAATCCCTGGAGGTCCAACCAAAACTTTAAATATAGCAGTGGTAATAGTTTCGCCACTGGTCCTGCTCCTCCTCCCCCACCATATACTCCACCTCCACCTTCTAACAATCGGCCACCCAAGTCCTCAAATGTGGTCCTTCATCAGGTGGCTCAAAGGGTGGGAACAGCAATAAGAAATCTCTGAGTGGTGGTGCCATAGCGGGCATAATATTTGCAGTTATTTTGACTGTTGTTGCTGCTATATTAGGAGTTATTTTATATGCACGTAAGTCTCCTAGAAGAGAGCAGGATGAAGAAAAACTAAGCAATCGCGTGTCTTTCACCCCCCTATCTCCCCTCGATGCTGAATTATTGAAAGAGAGTCCAGAGCAAAAAGTCAGCTCATCACCTCCTGAAATCACTCTTAAGCCTCCCCCCTCTGAACGCAACAAGTCTACAGGGACAAAGGCTTCGGAAGTA

Fln Alignment:

Contig542___SGWSANGGDPCGQSWKGVSCSGSSVTSIKXXXXXXXXXXXXXXXXXXXXXXXXXXNNNIQGNIPYALPQ--KLQELNLASNGLSGTIPYSISNMTGLTDLKLSHNQLSGQIQDIFGQLSSLSTLDLSFNTLT
B8LMF2________________SNWNPDDEDPC--KWRGVSCVDGNVVSLELVDLSLQGILAPELGQLIHLQKLVLCKNNFSGSIPKELGELGNLELLNLSHNGLIGKIPSDLGNISTLKSLLLTDNKLEGSIPPELGKIISLCELQLDRNQLS

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
294	80			20	0.995493
296		75	25		0.996473
297			25	75	0.996473
476			16	83	0.994512
477			16	83	0.994512
478		83	16		0.994512
527	83		16		0.994512
664	85			14	0.993533
922	75			25	0.996473
924	75		25		0.996473
925	75		25		0.996473
956	80		20		0.995493
957	80		20		0.995493
958			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain