SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene530

Length: 541 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene530
ATGGGGATCCCACTGTGATTAGTTTCCAGGAGGGAGGCCATGAATTACAGGTTCAAGAATCTGGTCGGCGCCCCATACAGGGGCGGAAATGCGATCATATCAAATAACACCCAGCTCCTGACGCCCGTGGGCAACCGTGTCTCTGTTGTGGACCTCGTGAAGTCGGAGACTGTGACGCTTCCTTGCGAGAACACCAAGAATGTGACGCGGATTGCTGTCTCCCCCAACGGGACTCTTCTCCTCTCTGTTGACGAAGAGGGCCGCTGTCTGCTTATCAACCTCCATCGCCGCGTCGTCCTGCACTGGATTTCCTTCAAGAATGCCGTCAGGGCCATCAAATTCAGCCCCGACGGTGCCCTCTTTGCCGTCGCCATAGGCAAGCTCGTACAGATCTGGCAGACGCCTGGCTTCAAGAAGGAATTCCTGCCGTTCCAACTCGTGCGGACGTTAAAGGGCTGTCACGACCACGTTACTTGCCTGGATTGGAGCCCCGATGGCCAGTGGATACTCGCCGGTTCCAAGGACTTAACGGCCAGGCTTG

Ace file of the UniGene biog2_v2.0_unigene530 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4734	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Periodic tryptophan protein-associated region; WD40-like [Medicago truncatula]	-	-	57%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	65%
Blast2go	periodic tryptophan protein 2	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	72%
Blast2go	transferase activity	GO:0016740	Molecular Function	72%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR007190	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9GKY2

Fln msg: Distance to subject end: 725 aas, your sequence is shorter than subject: 167 - 892

Fln protein: MNYRFKNLVGAPYRGGNAIISNNTQLLTPVGNRVSVVDLVKSETVTLPCENTKNVTRIAVSPNGTLLLSVDEEGRCLLINLHRRVVLHWISFKNAVRAIKFSPDGALFAVAIGKLVQIWQTPGFKKEFLPFQLVRTLKGCHDHVTCLDWSPDGQWILAGSKDLTARL

Protein Length: 168

Fln nts: ATGGGGATCCCACTGTGATTAGTTTCCAGGAGGGAGGCC_-_ATGAATTACAGGTTCAAGAATCTGGTCGGCGCCCCATACAGGGGCGGAAATGCGATCATATCAAATAACACCCAGCTCCTGACGCCCGTGGGCAACCGTGTCTCTGTTGTGGACCTCGTGAAGTCGGAGACTGTGACGCTTCCTTGCGAGAACACCAAGAATGTGACGCGGATTGCTGTCTCCCCCAACGGGACTCTTCTCCTCTCTGTTGACGAAGAGGGCCGCTGTCTGCTTATCAACCTCCATCGCCGCGTCGTCCTGCACTGGATTTCCTTCAAGAATGCCGTCAGGGCCATCAAATTCAGCCCCGACGGTGCCCTCTTTGCCGTCGCCATAGGCAAGCTCGTACAGATCTGGCAGACGCCTGGCTTCAAGAAGGAATTCCTGCCGTTCCAACTCGTGCGGACGTTAAAGGGCTGTCACGACCACGTTACTTGCCTGGATTGGAGCCCCGATGGCCAGTGGATACTCGCCGGTTCCAAGGACTTAACGGCCAGGCTTG

Fln Alignment:

Contig530___MNYRFKNLVGAPYRGGNAIISNNTQLLTPVGNRVSVVDLVKSETVTLPCENTKNVTRIAVSPNGTLLLSVDEEGRCLLINLHRRVVLHWISFKNAVRAIKFSPDGALFAVAIGKLVQIWQTPGFKKEFLPFQLVRTLKGCHDHVTCLDWSPDGQWILAGSKDLTARL
B9GKY2________________MNYRFHNLLGAPYRGGNVVITQNTQLISPVGNRVSITDLLKSQTITLPLQSSSNIRRIAASPDGTFLLTVDENHRCHFINIPRRVILHRINFKNAVNALKFSPDGKFIAVAAGKLVQIWRSPGFKKEFFAFELVRTIADCEDTVTAIDWSLDCKYLLVGSKDLVARL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
203		25		75	0.996473
410	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain